G00025YC

From GlycanData
Jump to navigation Jump to search

Sequence

GlycoCT

RES 1b:x-dglc-HEX-1:5 2s:n-acetyl 3b:b-dglc-HEX-1:5 4s:n-acetyl 5b:b-dman-HEX-1:5 6b:a-dman-HEX-1:5 7b:b-dglc-HEX-1:5 8s:n-acetyl 9b:b-dgal-HEX-1:5 10b:a-dman-HEX-1:5 11b:b-dglc-HEX-1:5 12s:n-acetyl 13b:a-lgal-HEX-1:5|6:d LIN 1:1d(2+1)2n 2:1o(4+1)3d 3:3d(2+1)4n 4:3o(4+1)5d 5:5o(3+1)6d 6:6o(2+1)7d 7:7d(2+1)8n 8:7o(4+1)9d 9:5o(6+1)10d 10:10o(2+1)11d 11:11d(2+1)12n 12:1o(6+1)13d UND UND1:100.0:100.0 ParentIDs:6|10 SubtreeLinkageID1:o(4|6+1)d RES 14b:b-dglc-HEX-1:5 15s:n-acetyl 16b:b-dgal-HEX-1:5 LIN 13:14d(2+1)15n 14:14o(4+1)16d

GlyTouCan
GlycoWorkBench

redEnd--?D-?-D-Glcp,p((--2NAc)--4b1D-b-D-Glcp,p(--2NAc)--4b1D-b-D-Manp,p(--3a1D-a-D-Manp,p--2b1D-b-D-Glcp,p(--2NAc)--4b1D-b-D-Galp,p)--6a1D-a-D-Manp,p--2b1D-b-D-Glcp,p--2NAc)--6a1L-a-L-Fucp,p}--4/6b?D-b-D-Glcp,p(--2NAc)--4b1D-b-D-Galp,p$MONO,perMe,Na,0,redEnd

EdwardsLab
WURCS

WURCS=2.0/6,11,10/[a2122h-1x_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][a1221m-1a_1-5]/1-2-3-4-2-5-4-2-6-2-5/a4-b1_a6-i1_b4-c1_c3-d1_c6-g1_d2-e1_e4-f1_g2-h1_j4-k1_j1-d4|d6|g4|g6}

GlyTouCan

Species

Human Evidence Subsumption of G13583BZ EdwardsLab
Mouse Evidence Composition closure of G08439GP via G64730RH
Composition closure of G25520XG via G64730RH
Composition closure of G45997JW via G64730RH
Composition closure of G58517TJ via G64730RH
EdwardsLab
Rat Evidence Composition closure of G13197FM via G64730RH
Composition closure of G25520XG via G64730RH
Composition closure of G47936PQ via G64730RH
Composition closure of G93141AZ via G64730RH
Composition closure of G97693ZT via G64730RH
EdwardsLab
SARS Evidence Composition closure of G61627IG via G64730RH EdwardsLab

Molecular Weight

PermethylatedMW 2466.26155647 EdwardsLab
UnderivitizedMW 1989.7294541 EdwardsLab
UnderivitizedMW 1989.7294532 GlyTouCan

Classification

GlycanSubtype N-linked complex GlycoMotif:GGM.001004
GlycanSubtype N-linked core-fucosylated GlycoMotif:GGM.001024
GlycanType N-linked GlycoMotif:GGM.001004

Monosaccharide Counts

FucCount 1 EdwardsLab
GalCount 2 EdwardsLab
GlcNAcCount 5 EdwardsLab
HexCount 5 EdwardsLab
HexNAcCount 5 EdwardsLab
ManCount 3 EdwardsLab
MonosaccharideCount 11 EdwardsLab
dHexCount 1 EdwardsLab
MonosaccharideCount 11 GlyTouCan

Cross Reference

GlyGen G00025YC EdwardsLab
GNOme G00025YC GNOme
GlyCosmos G00025YC GlyCosmos
CFG carbNlink_30602_A GlyTouCan
GlyTouCan G00025YC GlyTouCan
GlycomeDB 29557 GlyTouCan

Glycan Motif

ClassMotif GGM.001001, GGM.001004, GGM.001024, GGM.001027 GlycoMotif
Motif GGM.000001 GlycoMotif
StrictClassMotif GGM.001001, GGM.001004, GGM.001024, GGM.001027 GlycoMotif
StrictMotif GGM.000001 GlycoMotif

Subsumption

Ancestor G25235BX, G28171JR, G41071NU, G46569FG, G59884AJ, G64730RH, G85740DB, G90713ZK, G91636VS GNOme
BaseComposition G85740DB GNOme
Composition G64730RH GNOme
Descendant G13583BZ, G36108GD, G89375LQ, G90698PW GNOme
FullyDetermined G36108GD, G90698PW GNOme
Level Saccharide GNOme
MissingScore 115 GNOme
SubsumedBy G90713ZK GNOme
Subsumes G13583BZ, G89375LQ GNOme
Topology G90713ZK GNOme

Glycan Structure

Composition false EdwardsLab
FullyDetermined false EdwardsLab
HasMonosaccharide Fuc, Gal, GlcNAc, Hex, HexNAc, Man, dHex EdwardsLab
HasRepeat false EdwardsLab
ReducingEnd GlcNAc, HexNAc EdwardsLab
UndeterminedTopology true EdwardsLab