G00041IL
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Sequence
| GlycoCT | RES 1b:a-dgal-HEX-1:5 2s:n-acetyl 3b:x-dglc-HEX-1:5 4s:n-acetyl 5b:b-dgal-HEX-1:5 6b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d 7s:n-acetyl LIN 1:1d(2+1)2n 2:1o(3+1)3d 3:3d(2+1)4n 4:3o(3+1)5d 5:1o(6+2)6d 6:6d(5+1)7n |
GlyTouCan |
|---|---|---|
| GlycoWorkBench | redEnd--?a?D-a-D-Galp,p((--2NAc)--3?1D-?-D-Glcp,p(--2NAc)--3b1D-b-D-Galp,p)--6a2D-a-D-Neup,p--5NAc$MONO,perMe,Na,0,redEnd |
EdwardsLab |
| IUPAC | beta-D-Galp-(1->3)-?-D-GlcpNAc-(1->3)[alpha-D-Neup5Ac-(2->6)]-alpha-D-GalpNAc-(1-> |
EdwardsLab |
| IUPAC | beta-D-Galp-(1->3)-?-D-GlcpNAc-(1->3)[alpha-D-Neup5Ac-(2->6)]-alpha-D-GalpNAc-(1-> |
GlyCosmos |
| WURCS | WURCS=2.0/4,4,3/[a2112h-1a_1-5_2*NCC/3=O][a2122h-1x_1-5_2*NCC/3=O][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4/a3-b1_a6-d2_b3-c1 |
GlyTouCan |
Species
| Human Evidence | Subsumption of G19749DC | EdwardsLab |
|---|---|---|
| Mouse Evidence | Composition closure of G85608AG via G11785HS | EdwardsLab |
| Rat Evidence | Composition closure of G52460PC via G11785HS Composition closure of G78056MI via G11785HS Composition closure of G84818UM via G11785HS Composition closure of G85608AG via G11785HS Composition closure of G97227KS via G11785HS |
EdwardsLab |
Molecular Weight
| PermethylatedMW | 1101.56795117 | EdwardsLab |
|---|---|---|
| UnderivitizedMW | 877.317550045 | EdwardsLab |
| UnderivitizedMW | 877.31754966 | GlyTouCan |
Classification
| GlycanSubtype | O-linked core 3 | GlycoMotif:GGM.001009 |
|---|---|---|
| GlycanType | O-linked | GlycoMotif:GGM.001009 |
Monosaccharide Counts
| GalCount | 1 | EdwardsLab |
|---|---|---|
| GalNAcCount | 1 | EdwardsLab |
| GlcNAcCount | 1 | EdwardsLab |
| HexCount | 1 | EdwardsLab |
| HexNAcCount | 2 | EdwardsLab |
| MonosaccharideCount | 4 | EdwardsLab |
| NeuAcCount | 1 | EdwardsLab |
| SiaCount | 1 | EdwardsLab |
| MonosaccharideCount | 4 | GlyTouCan |
Cross Reference
| GlyGen | G00041IL | EdwardsLab |
|---|---|---|
| GNOme | G00041IL | GNOme |
| GlyCosmos | G00041IL | GlyCosmos |
| GlyConnectStructure | 763 | GlyTouCan |
| GlyTouCan | G00041IL | GlyTouCan |
Glycan Motif
| ClassMotif | GGM.001009, GGM.001010 | GlycoMotif |
|---|---|---|
| Motif | GGM.000005 | GlycoMotif |
Subsumption
| Ancestor | G11785HS, G14851AV, G41445CB, G44212UE, G48586RX, G55041QH, G85811SG | GNOme |
|---|---|---|
| BaseComposition | G85811SG | GNOme |
| Composition | G11785HS | GNOme |
| Descendant | G19749DC | GNOme |
| FullyDetermined | G19749DC | GNOme |
| Level | Saccharide | GNOme |
| MissingScore | 174 | GNOme |
| SubsumedBy | G44212UE | GNOme |
| Subsumes | G19749DC | GNOme |
| Topology | G41445CB | GNOme |
Glycan Structure
| Composition | false | EdwardsLab |
|---|---|---|
| FullyDetermined | false | EdwardsLab |
| HasMonosaccharide | Gal, GalNAc, GlcNAc, Hex, HexNAc, NeuAc, Sia | EdwardsLab |
| HasRepeat | false | EdwardsLab |
| ReducingEnd | GalNAc, HexNAc | EdwardsLab |
| UndeterminedTopology | false | EdwardsLab |