G00041IL

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Sequence

GlycoCT

RES 1b:a-dgal-HEX-1:5 2s:n-acetyl 3b:x-dglc-HEX-1:5 4s:n-acetyl 5b:b-dgal-HEX-1:5 6b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d 7s:n-acetyl LIN 1:1d(2+1)2n 2:1o(3+1)3d 3:3d(2+1)4n 4:3o(3+1)5d 5:1o(6+2)6d 6:6d(5+1)7n

GlyTouCan
GlycoWorkBench

redEnd--?a?D-a-D-Galp,p((--2NAc)--3?1D-?-D-Glcp,p(--2NAc)--3b1D-b-D-Galp,p)--6a2D-a-D-Neup,p--5NAc$MONO,perMe,Na,0,redEnd

EdwardsLab
IUPAC

beta-D-Galp-(1->3)-?-D-GlcpNAc-(1->3)[alpha-D-Neup5Ac-(2->6)]-alpha-D-GalpNAc-(1->

EdwardsLab
IUPAC

beta-D-Galp-(1->3)-?-D-GlcpNAc-(1->3)[alpha-D-Neup5Ac-(2->6)]-alpha-D-GalpNAc-(1->

GlyCosmos
WURCS

WURCS=2.0/4,4,3/[a2112h-1a_1-5_2*NCC/3=O][a2122h-1x_1-5_2*NCC/3=O][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4/a3-b1_a6-d2_b3-c1

GlyTouCan

Species

Human Evidence Subsumption of G19749DC EdwardsLab
Mouse Evidence Composition closure of G85608AG via G11785HS EdwardsLab
Rat Evidence Composition closure of G52460PC via G11785HS
Composition closure of G78056MI via G11785HS
Composition closure of G84818UM via G11785HS
Composition closure of G85608AG via G11785HS
Composition closure of G97227KS via G11785HS
EdwardsLab

Molecular Weight

PermethylatedMW 1101.56795117 EdwardsLab
UnderivitizedMW 877.317550045 EdwardsLab
UnderivitizedMW 877.31754966 GlyTouCan

Classification

GlycanSubtype O-linked core 3 GlycoMotif:GGM.001009
GlycanType O-linked GlycoMotif:GGM.001009

Monosaccharide Counts

GalCount 1 EdwardsLab
GalNAcCount 1 EdwardsLab
GlcNAcCount 1 EdwardsLab
HexCount 1 EdwardsLab
HexNAcCount 2 EdwardsLab
MonosaccharideCount 4 EdwardsLab
NeuAcCount 1 EdwardsLab
SiaCount 1 EdwardsLab
MonosaccharideCount 4 GlyTouCan

Cross Reference

GlyGen G00041IL EdwardsLab
GNOme G00041IL GNOme
GlyCosmos G00041IL GlyCosmos
GlyConnectStructure 763 GlyTouCan
GlyTouCan G00041IL GlyTouCan

Glycan Motif

ClassMotif GGM.001009, GGM.001010 GlycoMotif
Motif GGM.000005 GlycoMotif

Subsumption

Ancestor G11785HS, G14851AV, G41445CB, G44212UE, G48586RX, G55041QH, G85811SG GNOme
BaseComposition G85811SG GNOme
Composition G11785HS GNOme
Descendant G19749DC GNOme
FullyDetermined G19749DC GNOme
Level Saccharide GNOme
MissingScore 174 GNOme
SubsumedBy G44212UE GNOme
Subsumes G19749DC GNOme
Topology G41445CB GNOme

Glycan Structure

Composition false EdwardsLab
FullyDetermined false EdwardsLab
HasMonosaccharide Gal, GalNAc, GlcNAc, Hex, HexNAc, NeuAc, Sia EdwardsLab
HasRepeat false EdwardsLab
ReducingEnd GalNAc, HexNAc EdwardsLab
UndeterminedTopology false EdwardsLab