G00050MO

From GlycanData
Jump to navigation Jump to search

Sequence

GLYCAM-IUPAC

LFucpa1-2DGalpb1-3DGlcpNAcb1-3DGalpb1-4DGlcpb1-OH

EdwardsLab
GlycoCT

RES 1b:b-dglc-HEX-1:5 2b:b-dgal-HEX-1:5 3b:b-dglc-HEX-1:5 4s:n-acetyl 5b:b-dgal-HEX-1:5 6b:a-lgal-HEX-1:5|6:d LIN 1:1o(4+1)2d 2:2o(3+1)3d 3:3d(2+1)4n 4:3o(3+1)5d 5:5o(2+1)6d

GlyTouCan
GlycoWorkBench

redEnd--?b?D-b-D-Glcp,p--4b1D-b-D-Galp,p--3b1D-b-D-Glcp,p(--2NAc)--3b1D-b-D-Galp,p--2a1L-a-L-Fucp,p$MONO,perMe,Na,0,redEnd

EdwardsLab
IUPAC

alpha-L-Fucp-(1->2)-beta-D-Galp-(1->3)-beta-D-GlcpNAc-(1->3)-beta-D-Galp-(1->4)-beta-D-Glcp-(1->

EdwardsLab
IUPAC

alpha-L-Fucp-(1->2)-beta-D-Galp-(1->3)-beta-D-GlcpNAc-(1->3)-beta-D-Galp-(1->4)-beta-D-Glcp-(1->

GlyCosmos
WURCS

WURCS=2.0/4,5,4/[a2122h-1b_1-5][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5]/1-2-3-2-4/a4-b1_b3-c1_c3-d1_d2-e1

GlyTouCan

Taxonomy

Taxonomy 9606, 9823, 10090, 10114 GlyTouCan:G00050MO

Species

Human Evidence GlyTouCan:G00050MO TaxID 9606
No N-linked Xyl and no NeuGc, Alt
EdwardsLab
Mouse Evidence GlyTouCan:G00050MO TaxID 10090
No N-linked Xyl and no Alt
EdwardsLab
Rat Evidence GlyTouCan:G00050MO TaxID 10114
No N-linked Xyl and no Alt
EdwardsLab

Molecular Weight

PermethylatedMW 1077.5567178 EdwardsLab
UnderivitizedMW 853.306316675 EdwardsLab
UnderivitizedMW 853.30631628 GlyTouCan

Classification

GlycanSubtype Glycosphingolipid lacto series GlycoMotif:GGM.001106
GlycanType Glycosphingolipid GlycoMotif:GGM.001106

Monosaccharide Counts

FucCount 1 EdwardsLab
GalCount 2 EdwardsLab
GlcCount 1 EdwardsLab
GlcNAcCount 1 EdwardsLab
HexCount 3 EdwardsLab
HexNAcCount 1 EdwardsLab
MonosaccharideCount 5 EdwardsLab
dHexCount 1 EdwardsLab
MonosaccharideCount 5 GlyTouCan

Cross Reference

GlyGen G00050MO EdwardsLab
GNOme G00050MO GNOme
GlyCosmos G00050MO GlyCosmos
CFG carbSynthe_0027_D000, carbSynthe_0829_D000, carbSynthe_0830_D000 GlyTouCan
Carbbank(CCSB) 706, 707, 2603, 8360, 8723, 11647, 14076, 14545, 14898, 15609, 16293, 16566, 18203, 18420, 18437, 19508, 21071, 21321, 21741, 21883, 21903, 22779, 25513, 29099, 33616, 35052, 35061, 40777, 42842, 43866, 50200, 50492 GlyTouCan
ChEBI CHEBI:65276 GlyTouCan
GLYCOSCIENCES.de 687, 8309, 17667, 17678 GlyTouCan
GlyTouCan G00050MO GlyTouCan
GlycomeDB 545 GlyTouCan
KEGG G00044 GlyTouCan
PDB 2zl6, 3sln GlyTouCan
PubChem CID70678645, SID252285322 GlyTouCan
GlycO GOG1063 GlycomeDB

Glycan Motif

ClassMotif GGM.001106 GlycoMotif
Motif GGM.000005, GGM.000042 GlycoMotif
StrictClassMotif GGM.001106 GlycoMotif
StrictMotif GGM.000005, GGM.000042 GlycoMotif

Subsumption

Ancestor G01650PH, G05897GU, G07322TJ, G14307WQ, G19490AF, G29900GO, G33355QW, G35406BC, G41416MJ, G54630CD, G82935CH, G84985UI, G88572NY GNOme
BaseComposition G54630CD GNOme
Composition G82935CH GNOme
Level Saccharide GNOme
MissingScore 0 GNOme
SubsumedBy G01650PH, G41416MJ GNOme
Topology G29900GO GNOme

Glycan Structure

Composition false EdwardsLab
FullyDetermined true EdwardsLab
HasMonosaccharide Fuc, Gal, Glc, GlcNAc, Hex, HexNAc, dHex EdwardsLab
HasRepeat false EdwardsLab
ReducingEnd Glc, Hex EdwardsLab
UndeterminedTopology false EdwardsLab