G00054MO

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Sequence

GLYCAM-IUPAC

DNeup5Aca2-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-OH

EdwardsLab
GlycoCT

RES 1b:b-dglc-HEX-1:5 2s:n-acetyl 3b:a-lgal-HEX-1:5|6:d 4b:b-dgal-HEX-1:5 5b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d 6s:n-acetyl LIN 1:1d(2+1)2n 2:1o(3+1)3d 3:1o(4+1)4d 4:4o(3+2)5d 5:5d(5+1)6n

GlyTouCan
GlycoWorkBench

redEnd--?b?D-b-D-Glcp,p((--2NAc)--3a1L-a-L-Fucp,p)--4b1D-b-D-Galp,p--3a2D-a-D-Neup,p--5NAc$MONO,perMe,Na,0,redEnd

EdwardsLab
IUPAC

alpha-D-Neup5Ac-(2->3)-beta-D-Galp-(1->4)[alpha-L-Fucp-(1->3)]-beta-D-GlcpNAc-(1->

EdwardsLab
IUPAC

alpha-D-Neup5Ac-(2->3)-beta-D-Galp-(1->4)[alpha-L-Fucp-(1->3)]-beta-D-GlcpNAc-(1->

GlyCosmos
WURCS

WURCS=2.0/4,4,3/[a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4/a3-b1_a4-c1_c3-d2

GlyTouCan

Taxonomy

Taxonomy 210, 9031, 9542, 9544, 9606, 9823, 9986, 10029, 10036, 10090, 10114 GlyTouCan:G00054MO

Species

FruitFly Evidence Composition closure of G39294YF via G58879PQ EdwardsLab
Human Evidence GlyTouCan:G00054MO TaxID 9606
No N-linked Xyl and no NeuGc, Alt
EdwardsLab
Mouse Evidence GlyTouCan:G00054MO TaxID 10090
No N-linked Xyl and no Alt
EdwardsLab
Rat Evidence GlyTouCan:G00054MO TaxID 10114
No N-linked Xyl and no Alt
EdwardsLab

Molecular Weight

PermethylatedMW 1030.53083736 EdwardsLab
UnderivitizedMW 820.29608631 EdwardsLab
UnderivitizedMW 820.29608594 GlyTouCan

Monosaccharide Counts

FucCount 1 EdwardsLab
GalCount 1 EdwardsLab
GlcNAcCount 1 EdwardsLab
HexCount 1 EdwardsLab
HexNAcCount 1 EdwardsLab
MonosaccharideCount 4 EdwardsLab
NeuAcCount 1 EdwardsLab
SiaCount 1 EdwardsLab
dHexCount 1 EdwardsLab
MonosaccharideCount 4 GlyTouCan

Cross Reference

GlyGen G00054MO EdwardsLab
GNOme G00054MO GNOme
GlyCosmos G00054MO GlyCosmos
BCSDB 6922, 26818 GlyTouCan
CFG carbPDB_00002_D000, carbSynthe_0107_D000, carbSynthe_0559_D000, carbSynthe_0560_D000, carbSynthe_0733_D000, carbSynthe_0734_D000, carbSynthe_487_D000 GlyTouCan
Carbbank(CCSB) 1806, 6615, 7792, 8075, 11191, 14568, 20130, 21241, 25839, 27704, 28240, 28520, 28523, 28533, 29467, 30049, 30267, 30795, 31039, 31048, 31336, 31587, 31588, 31589, 31613, 31635, 31649, 31666, 32072, 32081, 32265, 32548, 32817, 33146, 33195, 33197, 33552, 33886, 33917, 34678, 34685, 34710, 34850, 34852, 34853, 34855, 34912, 34946, 34983, 35279, 35613, 35664, 35700, 35736, 36201, 36253, 36554, 36908, 36925, 36944, 36960, 37027, 37261, 37597, 37599, 38131, 38300, 38317, 38377, 38646, 38702, 39618, 40371, 41404, 41555, 41589, 41878, 42329, 42388, 42391, 42393, 42394, 42412, 42429, 42494, 42583, 42772, 42790, 43028, 43213, 43343, 43474, 43477, 43601, 43811, 43838, 44018, 44030, 44229, 44249, 44250, 44256, 44276, 44362, 44464, 44476, 44509, 44522, 44541, 44793, 44877, 44879, 45616, 45711, 45860, 45870, 45878, 45884, 45892, 45902, 46006, 46010, 46168, 46233, 46238, 46239, 46276, 46367, 46447, 46469, 46492, 46548, 46796, 46810, 46897, 47401, 47458, 47794, 47822, 48043, 48366, 48369, 48370, 48488, 48544, 48560, 48914, 49000, 49045, 49051, 49148, 49343, 49496, 49514, 50145, 50148, 50789 GlyTouCan
ChEBI CHEBI:71622 GlyTouCan
GLYCOSCIENCES.de 149, 1713, 2173, 2218, 2293, 4519, 6010, 9301, 13411, 19144, 19852, 22427 GlyTouCan
GlyTouCan G00054MO GlyTouCan
GlycoEpitope EP0012 GlyTouCan
GlycomeDB 129 GlyTouCan
PDB 1g1r, 1g1t, 2kmb, 2r61, 2z8l GlyTouCan
PubChem CID44456859, SID252277227 GlyTouCan

Publications

Publication 1358980, 1370643, 1699667, 1701274, 1701275, 2111348, 2119368, 2355463, 2568858, 2665633, 2747606, 3008996, 3545444, 3731100, 4016748, 6386148, 6469974, 7485559, 7521878, 7531823, 7560094, 7684905, 7693048, 7850810, 8239497, 8490832, 8542587, 8752218, 8958810, 9015359, 9164959, 9257857, 9261149, 9298690, 9398638, 9456330, 9556613, 9767440, 9790295, 9873990, 9887355, 10200296, 10528213, 10570420, 10728707, 11004681, 11919403, 12163379, 12385579, 12820726, 14568956, 15168731, 15330211, 17607374 GlyTouCan

Glycan Motif

Motif GGM.000001, GGM.000018, GGM.000022, GGM.000034 GlycoMotif
StrictMotif GGM.000001, GGM.000018, GGM.000022, GGM.000034 GlycoMotif

Subsumption

Ancestor G01010HI, G04943NQ, G05917SW, G11499FP, G12750SG, G12942ZN, G13065CP, G15602PX, G16340GB, G16746MI, G17394RC, G22933CR, G25705KO, G25727YQ, G26020CN, G27365DO, G42932DS, G43415ON, G58879PQ, G66768WN, G87205VF, G88888LR, G90387AM, G92992DL, G94845AQ, G95160NQ, G98896IU GNOme
BaseComposition G42932DS GNOme
Composition G58879PQ GNOme
Level Saccharide GNOme
MissingScore 0 GNOme
SubsumedBy G16746MI, G26020CN, G90387AM, G92992DL GNOme
Topology G12750SG GNOme

Glycan Structure

Composition false EdwardsLab
FullyDetermined true EdwardsLab
HasMonosaccharide Fuc, Gal, GlcNAc, Hex, HexNAc, NeuAc, Sia, dHex EdwardsLab
HasRepeat false EdwardsLab
ReducingEnd GlcNAc, HexNAc EdwardsLab
UndeterminedTopology false EdwardsLab