G00186OS

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Sequence

GlycoCT

RES 1b:b-dglc-HEX-1:5 2s:n-acetyl 3b:b-dglc-HEX-1:5 4s:n-acetyl 5b:b-dman-HEX-1:5 6b:a-dman-HEX-1:5 7b:b-dglc-HEX-1:5 8s:n-acetyl 9b:b-dgal-HEX-1:5 10b:a-dman-HEX-1:5 11b:b-dglc-HEX-1:5 12s:n-acetyl 13b:b-dgal-HEX-1:5 14b:a-dgal-HEX-1:5 15b:a-lgal-HEX-1:5|6:d LIN 1:1d(2+1)2n 2:1o(4+1)3d 3:3d(2+1)4n 4:3o(4+1)5d 5:5o(3+1)6d 6:6o(2+1)7d 7:7d(2+1)8n 8:7o(4+1)9d 9:5o(6+1)10d 10:10o(2+1)11d 11:11d(2+1)12n 12:11o(4+1)13d 13:13o(-1+1)14d 14:1o(6+1)15d

EdwardsLab
GlycoWorkBench

redEnd--?b?D-b-D-Glcp,p((--2NAc)--4b1D-b-D-Glcp,p(--2NAc)--4b1D-b-D-Manp,p(--3a1D-a-D-Manp,p--2b1D-b-D-Glcp,p(--2NAc)--4b1D-b-D-Galp,p)--6a1D-a-D-Manp,p--2b1D-b-D-Glcp,p(--2NAc)--4b1D-b-D-Galp,p--?a1D-a-D-Galp,p)--6a1L-a-L-Fucp,p$MONO,perMe,Na,0,redEnd

EdwardsLab
IUPAC

beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)[alpha-D-Galp-(1->?)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-beta-D-GlcpNAc-(1->

EdwardsLab
IUPAC

beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)[alpha-D-Galp-(1->?)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-beta-D-GlcpNAc-(1->

GlyCosmos
WURCS

WURCS=2.0/6,11,10/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][a2112h-1a_1-5][a1221m-1a_1-5]/1-1-2-3-1-4-3-1-4-5-6/a4-b1_a6-k1_b4-c1_c3-d1_c6-g1_d2-e1_e4-f1_g2-h1_h4-i1_i?-j1

GlyTouCan

Species

Human Evidence Composition closure of G23824AT via G96870OT
Composition closure of G81121OC via G96870OT
Composition closure of G82955EQ via G96870OT
EdwardsLab
Mouse Evidence Composition closure of G11571JL via G96870OT
Composition closure of G13178HT via G96870OT
Composition closure of G68354TY via G96870OT
Composition closure of G81121OC via G96870OT
Composition closure of G84674JQ via G96870OT
Composition closure of G93320VA via G96870OT
EdwardsLab
Rat Evidence Composition closure of G54611ZT via G96870OT
Composition closure of G84674JQ via G96870OT
EdwardsLab

Molecular Weight

PermethylatedMW 2425.23500737 EdwardsLab
UnderivitizedMW 1948.70290499 EdwardsLab
UnderivitizedMW 1948.7029041 GlyTouCan

Classification

GlycanSubtype N-linked complex GlycoMotif:GGM.001004
GlycanSubtype N-linked core-fucosylated GlycoMotif:GGM.001024
GlycanType N-linked GlycoMotif:GGM.001004

Monosaccharide Counts

FucCount 1 EdwardsLab
GalCount 3 EdwardsLab
GlcNAcCount 4 EdwardsLab
HexCount 6 EdwardsLab
HexNAcCount 4 EdwardsLab
ManCount 3 EdwardsLab
MonosaccharideCount 11 EdwardsLab
dHexCount 1 EdwardsLab
MonosaccharideCount 11 GlyTouCan

Cross Reference

GlyGen G00186OS EdwardsLab
GNOme G00186OS GNOme
GlyCosmos G00186OS GlyCosmos
GlyTouCan G00186OS GlyTouCan

Glycan Motif

ClassMotif GGM.001001, GGM.001004, GGM.001024, GGM.001027 GlycoMotif
Motif GGM.000001, GGM.000015 GlycoMotif
StrictClassMotif GGM.001001, GGM.001004, GGM.001024, GGM.001027 GlycoMotif
StrictMotif GGM.000001 GlycoMotif

Subsumption

Ancestor G09197ZW, G11571JL, G13751NN, G27753OZ, G46902YN, G54312KL, G64366DK, G70102HC, G72747WU, G77828QM, G87325NK, G96870OT GNOme
BaseComposition G09197ZW GNOme
Composition G96870OT GNOme
Descendant G26949IX GNOme
FullyDetermined G26949IX GNOme
Level Saccharide GNOme
MissingScore 33 GNOme
SubsumedBy G11571JL, G13751NN, G70102HC GNOme
Subsumes G26949IX GNOme
Topology G77828QM GNOme

Glycan Structure

Composition false EdwardsLab
FullyDetermined false EdwardsLab
HasMonosaccharide Fuc, Gal, GlcNAc, Hex, HexNAc, Man, dHex EdwardsLab
HasRepeat false EdwardsLab
ReducingEnd GlcNAc, HexNAc EdwardsLab
UndeterminedTopology false EdwardsLab