G00230CO

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Sequence

GlycoCT

RES 1b:x-dglc-HEX-1:5 2b:a-lgal-HEX-1:5|6:d 3s:n-acetyl 4b:b-dglc-HEX-1:5 5s:n-acetyl 6b:b-dman-HEX-1:5 7b:a-dman-HEX-1:5 8b:b-dglc-HEX-1:5 9s:n-acetyl 10b:b-dgal-HEX-1:5 11s:n-acetyl 12s:sulfate 13b:a-dman-HEX-1:5 14b:b-dglc-HEX-1:5 15s:n-acetyl 16b:b-dgal-HEX-1:5 17s:n-acetyl 18s:sulfate LIN 1:1o(3|6+1)2d 2:1d(2+1)3n 3:1o(4+1)4d 4:4d(2+1)5n 5:4o(4+1)6d 6:6o(3+1)7d 7:7o(2+1)8d 8:8d(2+1)9n 9:8o(4+1)10d 10:10d(2+1)11n 11:10o(4+1)12n 12:6o(6+1)13d 13:13o(2+1)14d 14:14d(2+1)15n 15:14o(4+1)16d 16:16d(2+1)17n 17:16o(4+1)18n

GlyTouCan
GlycoWorkBench

redEnd--?D-?-D-Glcp,p((--2NAc)--4b1D-b-D-Glcp,p(--2NAc)--4b1D-b-D-Manp,p(--3a1D-a-D-Manp,p--2b1D-b-D-Glcp,p(--2NAc)--4b1D-b-D-Galp,p(--2NAc)--4?1S)--6a1D-a-D-Manp,p--2b1D-b-D-Glcp,p(--2NAc)--4b1D-b-D-Galp,p(--2NAc)--4?1S)--3/6a1L-a-L-Fucp,p$MONO,perMe,Na,0,redEnd

EdwardsLab
IUPAC

beta-D-GalpNAc4OS-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)[beta-D-GalpNAc4OS-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->3/6)]-?-D-GlcpNAc-(1->

EdwardsLab
IUPAC

beta-D-GalpNAc4OS-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)[beta-D-GalpNAc4OS-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->3/6)]-?-D-GlcpNAc-(1->

GlyCosmos
WURCS

WURCS=2.0/6,10,9/[a2122h-1x_1-5_2*NCC/3=O][a1221m-1a_1-5][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5_2*NCC/3=O_4*OSO/3=O/3=O]/1-2-3-4-5-3-6-5-3-6/a4-c1_c4-d1_d3-e1_d6-h1_e2-f1_f4-g1_h2-i1_i4-j1_b1-a3|a6

GlyTouCan

Species

Human Evidence Subsumption of G29676WX
Subsumption of G75734VP
EdwardsLab

Molecular Weight

PermethylatedMW 2435.07066091 EdwardsLab
UnderivitizedMW 2028.61680888 EdwardsLab
UnderivitizedMW 2028.616809 GlyTouCan

Classification

GlycanSubtype N-linked complex GlycoMotif:GGM.001004
GlycanSubtype N-linked core-fucosylated GlycoMotif:GGM.001024
GlycanType N-linked GlycoMotif:GGM.001004

Monosaccharide Counts

FucCount 1 EdwardsLab
GalNAcCount 2 EdwardsLab
GlcNAcCount 4 EdwardsLab
HexCount 3 EdwardsLab
HexNAcCount 6 EdwardsLab
ManCount 3 EdwardsLab
MonosaccharideCount 10 EdwardsLab
SCount 2 EdwardsLab
dHexCount 1 EdwardsLab
MonosaccharideCount 10 GlyTouCan

Cross Reference

GlyGen G00230CO EdwardsLab
GNOme G00230CO GNOme
GlyCosmos G00230CO GlyCosmos
CFG carbNlink_45969_D000 GlyTouCan
GlyTouCan G00230CO GlyTouCan
GlycomeDB 35658 GlyTouCan

Glycan Motif

ClassMotif GGM.001001, GGM.001004, GGM.001024, GGM.001027 GlycoMotif
Motif GGM.000016, GGM.000049 GlycoMotif
StrictClassMotif GGM.001001, GGM.001004, GGM.001024, GGM.001027 GlycoMotif
StrictMotif GGM.000049 GlycoMotif

Subsumption

Ancestor G05471ZP, G12384BQ, G14232WZ, G26924LT, G30615JE, G36179RD, G37384PG, G39484PO, G44879DD, G47028HE, G50562US, G52342QP, G55584MG, G55999WZ, G61425UE, G62034LF, G71640LP, G77809CS, G87932HN, G89377JS GNOme
BaseComposition G71640LP GNOme
Composition G37384PG GNOme
Descendant G29676WX, G75734VP GNOme
FullyDetermined G29676WX GNOme
Level Saccharide GNOme
MissingScore 85 GNOme
SubsumedBy G30615JE GNOme
Subsumes G75734VP GNOme
Topology G39484PO GNOme

Glycan Structure

Composition false EdwardsLab
FullyDetermined false EdwardsLab
HasMonosaccharide Fuc, GalNAc, GlcNAc, Hex, HexNAc, Man, S, dHex EdwardsLab
HasRepeat false EdwardsLab
ReducingEnd GlcNAc, HexNAc EdwardsLab
UndeterminedTopology false EdwardsLab