G00412SV

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Sequence

GlycoCT

RES 1b:x-dglc-HEX-1:5 2b:x-lgal-HEX-1:5|6:d 3s:n-acetyl 4b:b-dglc-HEX-1:5 5s:n-acetyl 6b:b-dman-HEX-1:5 7b:x-dxyl-PEN-1:4 8b:a-dman-HEX-1:5 9b:b-dglc-HEX-1:5 10s:n-acetyl 11b:a-dman-HEX-1:5 12b:b-dglc-HEX-1:5 13s:n-acetyl LIN 1:1o(-1+1)2d 2:1d(2+1)3n 3:1o(4+1)4d 4:4d(2+1)5n 5:4o(4+1)6d 6:6o(-1+1)7d 7:6o(3+1)8d 8:8o(-1+1)9d 9:9d(2+1)10n 10:6o(6+1)11d 11:11o(-1+1)12d 12:12d(2+1)13n

GlyTouCan
GlycoWorkBench

redEnd--?D-?-D-Glcp,p((--2NAc)--4b1D-b-D-Glcp,p(--2NAc)--4b1D-b-D-Manp,p((--3a1D-a-D-Manp,p--?b1D-b-D-Glcp,p--2NAc)--6a1D-a-D-Manp,p--?b1D-b-D-Glcp,p--2NAc)--??1D-?-D-Xylf,f)--??1L-?-L-Fucp,p$MONO,perMe,Na,0,redEnd

EdwardsLab
IUPAC

beta-D-GlcpNAc-(1->?)-alpha-D-Manp-(1->3)[beta-D-GlcpNAc-(1->?)-alpha-D-Manp-(1->6)][?-D-Xylf-(1->?)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[?-L-Fucp-(1->?)]-?-D-GlcpNAc-(1->

EdwardsLab
IUPAC

beta-D-GlcpNAc-(1->?)-alpha-D-Manp-(1->3)[beta-D-GlcpNAc-(1->?)-alpha-D-Manp-(1->6)][?-D-Xylf-(1->?)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[?-L-Fucp-(1->?)]-?-D-GlcpNAc-(1->

GlyCosmos
WURCS

WURCS=2.0/6,9,8/[a2122h-1x_1-5_2*NCC/3=O][a1221m-1x_1-5][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a212h-1x_1-4][a1122h-1a_1-5]/1-2-3-4-5-6-3-6-3/a4-c1_c4-d1_d3-f1_d6-h1_a?-b1_d?-e1_f?-g1_h?-i1

GlyTouCan

Species

Human Evidence Composition closure of G75927AR via G74396AN EdwardsLab
Mouse Evidence Composition closure of G49930HB via G74396AN EdwardsLab

Molecular Weight

PermethylatedMW 1973.00924518 EdwardsLab
UnderivitizedMW 1594.58669329 EdwardsLab
UnderivitizedMW 1594.5866926 GlyTouCan

Classification

GlycanSubtype N-linked complex GlycoMotif:GGM.001004
GlycanSubtype N-linked core-fucosylated GlycoMotif:GGM.001024
GlycanType N-linked GlycoMotif:GGM.001004

Monosaccharide Counts

FucCount 1 EdwardsLab
GlcNAcCount 4 EdwardsLab
HexCount 3 EdwardsLab
HexNAcCount 4 EdwardsLab
ManCount 3 EdwardsLab
MonosaccharideCount 9 EdwardsLab
PentCount 1 EdwardsLab
XylCount 1 EdwardsLab
dHexCount 1 EdwardsLab
MonosaccharideCount 9 GlyTouCan

Cross Reference

GlyGen G00412SV EdwardsLab
GNOme G00412SV GNOme
GlyCosmos G00412SV GlyCosmos
GlyTouCan G00412SV GlyTouCan
GlycomeDB 40356 GlyTouCan

Glycan Motif

ClassMotif GGM.001001, GGM.001004, GGM.001024, GGM.001027 GlycoMotif
StrictClassMotif GGM.001001, GGM.001027 GlycoMotif

Subsumption

Ancestor G66732FU, G74396AN, G81920JR GNOme
BaseComposition G81920JR GNOme
Composition G74396AN GNOme
Descendant G23795SX, G36598KD, G67411ST, G69600TI, G80366RR GNOme
FullyDetermined G69600TI, G80366RR GNOme
Level Saccharide GNOme
MissingScore 395 GNOme
SubsumedBy G66732FU GNOme
Subsumes G23795SX, G36598KD, G67411ST GNOme
Topology G66732FU GNOme

Glycan Structure

Composition false EdwardsLab
FullyDetermined false EdwardsLab
HasMonosaccharide Fuc, GlcNAc, Hex, HexNAc, Man, Pent, Xyl, dHex EdwardsLab
HasRepeat false EdwardsLab
ReducingEnd GlcNAc, HexNAc EdwardsLab
UndeterminedTopology false EdwardsLab