G00503EE

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Sequence

GlycoCT

RES 1b:x-dglc-HEX-1:5 2s:n-acetyl 3b:b-dglc-HEX-1:5 4s:n-acetyl 5b:b-dman-HEX-1:5 6b:a-dman-HEX-1:5 7b:b-dglc-HEX-1:5 8s:n-acetyl 9b:b-dglc-HEX-1:5 10s:n-acetyl 11b:a-dman-HEX-1:5 12b:b-dglc-HEX-1:5 13s:n-acetyl 14b:b-dgal-HEX-1:5 15b:b-dglc-HEX-1:5 16s:n-acetyl 17b:b-dgal-HEX-1:5 18b:a-lgal-HEX-1:5|6:d LIN 1:1d(2+1)2n 2:1o(4+1)3d 3:3d(2+1)4n 4:3o(4+1)5d 5:5o(3+1)6d 6:6o(2+1)7d 7:7d(2+1)8n 8:6o(4+1)9d 9:9d(2+1)10n 10:5o(6+1)11d 11:11o(2+1)12d 12:12d(2+1)13n 13:12o(4+1)14d 14:11o(6+1)15d 15:15d(2+1)16n 16:15o(4+1)17d 17:1o(6+1)18d

GlyTouCan
GlycoWorkBench

redEnd--?D-?-D-Glcp,p((--2NAc)--4b1D-b-D-Glcp,p(--2NAc)--4b1D-b-D-Manp,p(--3a1D-a-D-Manp,p(--2b1D-b-D-Glcp,p--2NAc)--4b1D-b-D-Glcp,p--2NAc)--6a1D-a-D-Manp,p(--2b1D-b-D-Glcp,p(--2NAc)--4b1D-b-D-Galp,p)--6b1D-b-D-Glcp,p(--2NAc)--4b1D-b-D-Galp,p)--6a1L-a-L-Fucp,p$MONO,perMe,Na,0,redEnd

EdwardsLab
IUPAC

beta-D-GlcpNAc-(1->2)[beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->3)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-?-D-GlcpNAc-(1->

EdwardsLab
IUPAC

beta-D-GlcpNAc-(1->2)[beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->3)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-?-D-GlcpNAc-(1->

GlyCosmos
WURCS

WURCS=2.0/6,12,11/[a2122h-1x_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][a1221m-1a_1-5]/1-2-3-4-2-2-4-2-5-2-5-6/a4-b1_a6-l1_b4-c1_c3-d1_c6-g1_d2-e1_d4-f1_g2-h1_g6-j1_h4-i1_j4-k1

GlyTouCan

Taxonomy

Taxonomy 9823, 10090 GlyTouCan:G00503EE

Species

Human Evidence Composition closure of G40124HY via G95640AM
Composition closure of G81107PN via G95640AM
EdwardsLab
Mouse Evidence GlyTouCan:G00503EE TaxID 10090
No N-linked Xyl and no Alt
EdwardsLab
Rat Evidence Composition closure of G15987FM via G95640AM
Composition closure of G21729HC via G95640AM
Composition closure of G31747RS via G95640AM
Composition closure of G40124HY via G95640AM
Composition closure of G61088TM via G95640AM
EdwardsLab

Molecular Weight

PermethylatedMW 2711.38787929 EdwardsLab
UnderivitizedMW 2192.8088267 EdwardsLab
UnderivitizedMW 2192.8088257 GlyTouCan

Classification

GlycanSubtype N-linked complex GlycoMotif:GGM.001004
GlycanSubtype N-linked core-fucosylated GlycoMotif:GGM.001024
GlycanType N-linked GlycoMotif:GGM.001004

Monosaccharide Counts

FucCount 1 EdwardsLab
GalCount 2 EdwardsLab
GlcNAcCount 6 EdwardsLab
HexCount 5 EdwardsLab
HexNAcCount 6 EdwardsLab
ManCount 3 EdwardsLab
MonosaccharideCount 12 EdwardsLab
dHexCount 1 EdwardsLab
MonosaccharideCount 12 GlyTouCan

Cross Reference

GlyGen G00503EE EdwardsLab
GNOme G00503EE GNOme
GlyCosmos G00503EE GlyCosmos
CFG carbNlink_40087_D000, carbNlink_40388_D000 GlyTouCan
GlyTouCan G00503EE GlyTouCan
GlycomeDB 19000 GlyTouCan
KEGG G02729 GlyTouCan
PubChem CID91847573, SID252278894 GlyTouCan

Glycan Motif

ClassMotif GGM.001001, GGM.001004, GGM.001024, GGM.001027 GlycoMotif
Motif GGM.000001 GlycoMotif
StrictClassMotif GGM.001001, GGM.001004, GGM.001024, GGM.001027 GlycoMotif
StrictMotif GGM.000001 GlycoMotif

Subsumption

Ancestor G09449AA, G16883LE, G17140MC, G26030JN, G27915IV, G49555JQ, G51067CM, G69364JQ, G72713XG, G89098OM, G89905SH, G95640AM, G96510EZ GNOme
BaseComposition G69364JQ GNOme
Composition G95640AM GNOme
Descendant G00536FZ GNOme
FullyDetermined G00536FZ GNOme
Level Saccharide GNOme
MissingScore 58 GNOme
SubsumedBy G16883LE, G26030JN, G89905SH, G96510EZ GNOme
Subsumes G00536FZ GNOme
Topology G96510EZ GNOme

Glycan Structure

Composition false EdwardsLab
FullyDetermined true EdwardsLab
HasMonosaccharide Fuc, Gal, GlcNAc, Hex, HexNAc, Man, dHex EdwardsLab
HasRepeat false EdwardsLab
ReducingEnd GlcNAc, HexNAc EdwardsLab
UndeterminedTopology false EdwardsLab