G00553AN

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Sequence

GlycoCT

RES 1b:b-dglc-HEX-1:5 2s:n-acetyl 3b:b-dglc-HEX-1:5 4s:n-acetyl 5b:b-dman-HEX-1:5 6b:a-dman-HEX-1:5 7b:a-dman-HEX-1:5 8b:a-lgal-HEX-1:5|6:d LIN 1:1d(2+1)2n 2:1o(4+1)3d 3:3d(2+1)4n 4:3o(4+1)5d 5:5o(3+1)6d 6:5o(6+1)7d 7:1o(6+1)8d UND UND1:100.0:100.0 ParentIDs:1|3|5|6|7|8 SubtreeLinkageID1:o(-1+1)d RES 9b:x-dglc-HEX-1:5 10b:x-dgal-HEX-1:5 11b:x-dgro-dgal-NON-2:6|1:a|2:keto|3:d 12s:n-acetyl 13s:n-acetyl LIN 8:9o(-1+1)10d 9:10o(-1+2)11d 10:11d(5+1)12n 11:9d(2+1)13n UND2:100.0:100.0 ParentIDs:1|3|5|6|7|8 SubtreeLinkageID1:o(-1+1)d RES 14b:x-dglc-HEX-1:5 15b:x-dgal-HEX-1:5 16b:x-dgro-dgal-NON-2:6|1:a|2:keto|3:d 17s:n-acetyl 18s:n-acetyl LIN 12:14o(-1+1)15d 13:15o(-1+2)16d 14:16d(5+1)17n 15:14d(2+1)18n UND3:100.0:100.0 ParentIDs:1|3|5|6|7|8 SubtreeLinkageID1:o(-1+1)d RES 19b:x-dglc-HEX-1:5 20b:x-dgal-HEX-1:5 21s:n-acetyl LIN 16:19o(-1+1)20d 17:19d(2+1)21n

GlyTouCan
GlycoWorkBench

redEnd--?b?D-b-D-Glcp,p((--2NAc)--4b1D-b-D-Glcp,p(--2NAc)--4b1D-b-D-Manp,p(--3a1D-a-D-Manp,p)--6a1D-a-D-Manp,p)--6a1L-a-L-Fucp,p}((--?D-?-D-Glcp,p(--2NAc)--??1D-?-D-Galp,p)--?D-?-D-Glcp,p(--2NAc)--??1D-?-D-Galp,p--??2D-?-D-Neup,p--5NAc)--?D-?-D-Glcp,p(--2NAc)--??1D-?-D-Galp,p--??2D-?-D-Neup,p--5NAc$MONO,perMe,Na,0,redEnd

EdwardsLab
WURCS

WURCS=2.0/7,14,13/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2122h-1x_1-5_2*NCC/3=O][a2112h-1x_1-5][Aad21122h-2x_2-6_5*NCC/3=O]/1-1-2-3-3-4-5-6-7-5-6-7-5-6/a4-b1_a6-f1_b4-c1_c3-d1_c6-e1_g?-h1_h?-i2_j?-k1_k?-l2_m?-n1_g1-a?|b?|c?|d?|e?|f?}_j1-a?|b?|c?|d?|e?|f?}_m1-a?|b?|c?|d?|e?|f?}

GlyTouCan

Taxonomy

Taxonomy 9606 UniCarbKB:7817

Species

Human Evidence No N-linked Xyl and no NeuGc, Alt
UniCarbKB:7817 TaxID 9606
EdwardsLab
Mouse Evidence Composition closure of G58848QS via G58076ER
Composition closure of G64048GU via G58076ER
Composition closure of G75977KH via G58076ER
EdwardsLab

Molecular Weight

PermethylatedMW 3392.70866415 EdwardsLab
UnderivitizedMW 2733.97311086 EdwardsLab
UnderivitizedMW 2733.9731097 GlyTouCan

Classification

GlycanSubtype N-linked complex GlycoMotif:GGM.001004
GlycanSubtype N-linked bisected GlycoMotif:GGM.001023
GlycanSubtype N-linked core-fucosylated GlycoMotif:GGM.001024
GlycanType N-linked GlycoMotif:GGM.001004

Monosaccharide Counts

FucCount 1 EdwardsLab
GalCount 3 EdwardsLab
GlcNAcCount 5 EdwardsLab
HexCount 6 EdwardsLab
HexNAcCount 5 EdwardsLab
ManCount 3 EdwardsLab
MonosaccharideCount 14 EdwardsLab
NeuAcCount 2 EdwardsLab
SiaCount 2 EdwardsLab
dHexCount 1 EdwardsLab
MonosaccharideCount 14 GlyTouCan

Cross Reference

GlyGen G00553AN EdwardsLab
GNOme G00553AN GNOme
GlyCosmos G00553AN GlyCosmos
GlyTouCan G00553AN GlyTouCan
UniCarbKB 7817 UniCarbKB

Publications

Publication 17956937 UniCarbKB:7817

Glycan Motif

ClassMotif GGM.001001, GGM.001004, GGM.001023, GGM.001024, GGM.001027 GlycoMotif
Motif GGM.000001, GGM.000005, GGM.000034 GlycoMotif
StrictClassMotif GGM.001001, GGM.001024, GGM.001027 GlycoMotif

Subsumption

Ancestor G11629QQ, G23028IO, G25569EP, G49917IO, G57776ZS, G58076ER, G59699IB, G66150ZZ, G85144OK GNOme
BaseComposition G25569EP GNOme
Composition G58076ER GNOme
Descendant G01354KL, G03075ZE, G10228OD, G16150CJ, G16529MG, G18581LO, G31662BR, G38022PE, G39810GC, G42686NQ, G45720CA, G47280HM, G62765SF, G80537QW, G87489PB, G91905FJ GNOme
FullyDetermined G01354KL, G03075ZE, G10228OD, G16150CJ, G16529MG, G18581LO, G31662BR, G38022PE, G42686NQ, G45720CA, G47280HM, G62765SF, G80537QW, G91905FJ GNOme
Level Saccharide GNOme
MissingScore 913 GNOme
SubsumedBy G66150ZZ GNOme
Subsumes G16529MG, G39810GC, G80537QW, G87489PB, G91905FJ GNOme

Glycan Structure

Composition false EdwardsLab
FullyDetermined false EdwardsLab
HasMonosaccharide Fuc, Gal, GlcNAc, Hex, HexNAc, Man, NeuAc, Sia, dHex EdwardsLab
HasRepeat false EdwardsLab
ReducingEnd GlcNAc, HexNAc EdwardsLab
UndeterminedTopology true EdwardsLab