G00582VL

From GlycanData
Jump to navigation Jump to search

Sequence

GlycoCT

RES 1b:x-dglc-HEX-1:5 2s:n-acetyl 3b:b-dglc-HEX-1:5 4s:n-acetyl 5b:b-dman-HEX-1:5 6b:a-dman-HEX-1:5 7b:b-dglc-HEX-1:5 8s:n-acetyl 9b:b-dgal-HEX-1:5 10s:n-acetyl 11s:sulfate 12b:a-dman-HEX-1:5 13b:a-dman-HEX-1:5 14b:a-dman-HEX-1:5 15b:a-lgal-HEX-1:5|6:d LIN 1:1d(2+1)2n 2:1o(4+1)3d 3:3d(2+1)4n 4:3o(4+1)5d 5:5o(3+1)6d 6:6o(2+1)7d 7:7d(2+1)8n 8:7o(4+1)9d 9:9d(2+1)10n 10:9o(4+1)11n 11:5o(6+1)12d 12:12o(3+1)13d 13:13o(6+1)14d 14:1o(6+1)15d

GlyTouCan
GlycoWorkBench

redEnd--?D-?-D-Glcp,p((--2NAc)--4b1D-b-D-Glcp,p(--2NAc)--4b1D-b-D-Manp,p(--3a1D-a-D-Manp,p--2b1D-b-D-Glcp,p(--2NAc)--4b1D-b-D-Galp,p(--2NAc)--4?1S)--6a1D-a-D-Manp,p--3a1D-a-D-Manp,p--6a1D-a-D-Manp,p)--6a1L-a-L-Fucp,p$MONO,perMe,Na,0,redEnd

EdwardsLab
IUPAC

beta-D-GalpNAc4OS-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)[alpha-D-Manp-(1->6)-alpha-D-Manp-(1->3)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-?-D-GlcpNAc-(1->

EdwardsLab
IUPAC

beta-D-GalpNAc4OS-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)[alpha-D-Manp-(1->6)-alpha-D-Manp-(1->3)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-?-D-GlcpNAc-(1->

GlyCosmos
WURCS

WURCS=2.0/6,10,9/[a2122h-1x_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5_2*NCC/3=O_4*OSO/3=O/3=O][a1221m-1a_1-5]/1-2-3-4-2-5-4-4-4-6/a4-b1_a6-j1_b4-c1_c3-d1_c6-g1_d2-e1_e4-f1_g3-h1_h6-i1

GlyTouCan

Taxonomy

Taxonomy 9606 GlyTouCan:G00582VL

Species

Human Evidence GlyTouCan:G00582VL TaxID 9606
No N-linked Xyl and no NeuGc, Alt
EdwardsLab

Molecular Weight

PermethylatedMW 2287.07639818 EdwardsLab
UnderivitizedMW 1866.60689608 EdwardsLab
UnderivitizedMW 1866.6068957 GlyTouCan

Classification

GlycanSubtype N-linked hybrid GlycoMotif:GGM.001003
GlycanSubtype N-linked core-fucosylated GlycoMotif:GGM.001024
GlycanType N-linked GlycoMotif:GGM.001003

Monosaccharide Counts

FucCount 1 EdwardsLab
GalNAcCount 1 EdwardsLab
GlcNAcCount 3 EdwardsLab
HexCount 5 EdwardsLab
HexNAcCount 4 EdwardsLab
ManCount 5 EdwardsLab
MonosaccharideCount 10 EdwardsLab
SCount 1 EdwardsLab
dHexCount 1 EdwardsLab
MonosaccharideCount 10 GlyTouCan

Cross Reference

GlyGen G00582VL EdwardsLab
GNOme G00582VL GNOme
GlyCosmos G00582VL GlyCosmos
CFG carbNlink_44016_D000 GlyTouCan
GlyTouCan G00582VL GlyTouCan
GlycomeDB 20193 GlyTouCan
KEGG G04498 GlyTouCan
PubChem CID91845362, SID252276240 GlyTouCan

Glycan Motif

ClassMotif GGM.001001, GGM.001003, GGM.001024, GGM.001027 GlycoMotif
Motif GGM.000016, GGM.000049 GlycoMotif
StrictClassMotif GGM.001001, GGM.001003, GGM.001024, GGM.001027 GlycoMotif
StrictMotif GGM.000049 GlycoMotif

Subsumption

Ancestor G18629WM, G32466NT, G34574WR, G46539GP, G52798MY, G61490XD, G63236GA, G64327YL, G74737SS, G77078IK, G90514SP GNOme
BaseComposition G63236GA GNOme
Composition G34574WR GNOme
Level Saccharide GNOme
MissingScore 69 GNOme
SubsumedBy G46539GP GNOme
Topology G46539GP GNOme

Glycan Structure

Composition false EdwardsLab
FullyDetermined true EdwardsLab
HasMonosaccharide Fuc, GalNAc, GlcNAc, Hex, HexNAc, Man, S, dHex EdwardsLab
HasRepeat false EdwardsLab
ReducingEnd GlcNAc, HexNAc EdwardsLab
UndeterminedTopology false EdwardsLab