G00800WJ

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Sequence

GlycoCT

RES 1b:b-dglc-HEX-1:5 2s:n-acetyl 3b:b-dglc-HEX-1:5 4s:n-acetyl 5b:b-dman-HEX-1:5 6b:a-dman-HEX-1:5 7b:b-dglc-HEX-1:5 8s:n-acetyl 9b:b-dgal-HEX-1:5 10b:a-dman-HEX-1:5 11b:b-dglc-HEX-1:5 12s:n-acetyl 13b:b-dgal-HEX-1:5 14b:b-dglc-HEX-1:5 15s:n-acetyl 16b:b-dgal-HEX-1:5 17b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d 18s:n-acetyl 19b:a-lgal-HEX-1:5|6:d LIN 1:1d(2+1)2n 2:1o(4+1)3d 3:3d(2+1)4n 4:3o(4+1)5d 5:5o(-1+1)6d 6:6o(2+1)7d 7:7d(2+1)8n 8:7o(4+1)9d 9:5o(-1+1)10d 10:10o(-1+1)11d 11:11d(2+1)12n 12:11o(4+1)13d 13:10o(-1+1)14d 14:14d(2+1)15n 15:14o(4+1)16d 16:16o(3+2)17d 17:17d(5+1)18n 18:1o(6+1)19d UND UND1:100.0:100.0 ParentIDs:1|3|5|6|7|9|10|11|13|14|16|17|19 SubtreeLinkageID1:o(3+2)d RES 20b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d 21s:n-acetyl LIN 19:20d(5+1)21n

GlyTouCan
GlycoWorkBench

redEnd--?b?D-b-D-Glcp,p((--2NAc)--4b1D-b-D-Glcp,p(--2NAc)--4b1D-b-D-Manp,p(--?a1D-a-D-Manp,p(--?b1D-b-D-Glcp,p(--2NAc)--4b1D-b-D-Galp,p--3a2D-a-D-Neup,p--5NAc)--?b1D-b-D-Glcp,p(--2NAc)--4b1D-b-D-Galp,p)--?a1D-a-D-Manp,p--2b1D-b-D-Glcp,p(--2NAc)--4b1D-b-D-Galp,p)--6a1L-a-L-Fucp,p}--3a?D-a-D-Neup,p--5NAc$MONO,perMe,Na,0,redEnd

EdwardsLab
WURCS

WURCS=2.0/6,14,13/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-1-2-3-1-4-5-1-4-3-1-4-6-5/a4-b1_a6-m1_b4-c1_e4-f1_f3-g2_h4-i1_j2-k1_k4-l1_n2-a3|b3|c3|d3|e3|f3|g3|h3|i3|j3|k3|l3|m3}_c?-d1_c?-j1_d?-e1_d?-h1

GlyTouCan

Taxonomy

Taxonomy 9606 GlyConnectStructure:2590
Taxonomy 9606 UniCarbKB:7151

Species

Human Evidence GlyConnectStructure:2590 TaxID 9606
No N-linked Xyl and no NeuGc, Alt
UniCarbKB:7151 TaxID 9606
EdwardsLab
Mouse Evidence Composition closure of G58848QS via G58076ER
Composition closure of G64048GU via G58076ER
Composition closure of G75977KH via G58076ER
EdwardsLab

Molecular Weight

PermethylatedMW 3392.70866415 EdwardsLab
UnderivitizedMW 2733.97311086 EdwardsLab
UnderivitizedMW 2733.9731097 GlyTouCan

Classification

GlycanSubtype N-linked complex GlycoMotif:GGM.001004
GlycanSubtype N-linked core-fucosylated GlycoMotif:GGM.001024
GlycanType N-linked GlycoMotif:GGM.001004

Monosaccharide Counts

FucCount 1 EdwardsLab
GalCount 3 EdwardsLab
GlcNAcCount 5 EdwardsLab
HexCount 6 EdwardsLab
HexNAcCount 5 EdwardsLab
ManCount 3 EdwardsLab
MonosaccharideCount 14 EdwardsLab
NeuAcCount 2 EdwardsLab
SiaCount 2 EdwardsLab
dHexCount 1 EdwardsLab
MonosaccharideCount 14 GlyTouCan

Cross Reference

GlyGen G00800WJ EdwardsLab
GNOme G00800WJ GNOme
GlyCosmos G00800WJ GlyCosmos
GlyConnectStructure 2590 GlyTouCan
GlyTouCan G00800WJ GlyTouCan
UniCarbKB 7151 UniCarbKB

Publications

Publication 8942648 UniCarbKB:7151

Glycan Motif

ClassMotif GGM.001001, GGM.001004, GGM.001024, GGM.001027 GlycoMotif
Motif GGM.000001, GGM.000034 GlycoMotif
StrictClassMotif GGM.001027 GlycoMotif
StrictMotif GGM.000001, GGM.000034 GlycoMotif

Subsumption

Ancestor G11629QQ, G23028IO, G25569EP, G28149YN, G49917IO, G57776ZS, G58076ER, G59699IB, G85144OK, G94571WF GNOme
BaseComposition G25569EP GNOme
Composition G58076ER GNOme
Descendant G10228OD, G16150CJ, G16529MG, G62765SF, G80537QW, G91905FJ GNOme
FullyDetermined G10228OD, G16150CJ, G16529MG, G62765SF, G80537QW, G91905FJ GNOme
Level Saccharide GNOme
MissingScore 351 GNOme
SubsumedBy G28149YN GNOme
Subsumes G10228OD, G16150CJ, G16529MG, G62765SF, G80537QW, G91905FJ GNOme
Topology G94571WF GNOme

Glycan Structure

Composition false EdwardsLab
FullyDetermined false EdwardsLab
HasMonosaccharide Fuc, Gal, GlcNAc, Hex, HexNAc, Man, NeuAc, Sia, dHex EdwardsLab
HasRepeat false EdwardsLab
ReducingEnd GlcNAc, HexNAc EdwardsLab
UndeterminedTopology true EdwardsLab