G04281RT

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Sequence

GlycoCT

RES 1b:x-dglc-HEX-1:5 2b:x-dgal-HEX-1:5 3b:x-dgal-HEX-1:5 4b:x-dgal-HEX-1:5 5s:n-acetyl 6b:x-dgal-HEX-1:5 7b:x-lgal-HEX-1:5|6:d 8b:x-dgal-HEX-1:5 9s:n-acetyl LIN 1:1o(-1+1)2d 2:2o(-1+1)3d 3:3o(-1+1)4d 4:4d(2+1)5n 5:4o(-1+1)6d 6:6o(-1+1)7d 7:6o(-1+1)8d 8:8d(2+1)9n

GlyTouCan
GlycoWorkBench

redEnd--?D-?-D-Glcp,p--??1D-?-D-Galp,p--??1D-?-D-Galp,p--??1D-?-D-Galp,p(--2NAc)--??1D-?-D-Galp,p(--??1L-?-L-Fucp,p)--??1D-?-D-Galp,p--2NAc$MONO,perMe,Na,0,redEnd

EdwardsLab
IUPAC

?-D-GalpNAc-(1->?)[?-L-Fucp-(1->?)]-?-D-Galp-(1->?)-?-D-GalpNAc-(1->?)-?-D-Galp-(1->?)-?-D-Galp-(1->?)-?-D-Glcp-(1->

EdwardsLab
IUPAC

?-D-GalpNAc-(1->?)[?-L-Fucp-(1->?)]-?-D-Galp-(1->?)-?-D-GalpNAc-(1->?)-?-D-Galp-(1->?)-?-D-Galp-(1->?)-?-D-Glcp-(1->

GlyCosmos
WURCS

WURCS=2.0/4,7,6/[a2122h-1x_1-5][a2112h-1x_1-5][a2112h-1x_1-5_2*NCC/3=O][a1221m-1x_1-5]/1-2-2-3-2-4-3/a?-b1_b?-c1_c?-d1_d?-e1_e?-f1_e?-g1

GlyTouCan

Species

Human Evidence Subsumption of G37830TX EdwardsLab
Mouse Evidence Subsumption of G37830TX EdwardsLab
Rat Evidence Composition closure of G76684IW via G21581IH EdwardsLab

Molecular Weight

PermethylatedMW 1526.78281432 EdwardsLab
UnderivitizedMW 1218.43851278 EdwardsLab
UnderivitizedMW 1218.4385122 GlyTouCan

Classification

GlycanSubtype Glycosphingolipid isoglobo series GlycoMotif:GGM.001101
GlycanSubtype Glycosphingolipid globo series GlycoMotif:GGM.001109
GlycanType Glycosphingolipid GlycoMotif:GGM.001101

Monosaccharide Counts

FucCount 1 EdwardsLab
GalCount 3 EdwardsLab
GalNAcCount 2 EdwardsLab
GlcCount 1 EdwardsLab
HexCount 4 EdwardsLab
HexNAcCount 2 EdwardsLab
MonosaccharideCount 7 EdwardsLab
dHexCount 1 EdwardsLab
MonosaccharideCount 7 GlyTouCan

Cross Reference

GlyGen G04281RT EdwardsLab
GNOme G04281RT GNOme
GlyCosmos G04281RT GlyCosmos
GlyTouCan G04281RT GlyTouCan

Glycan Motif

ClassMotif GGM.001101, GGM.001109 GlycoMotif
Motif GGM.000015, GGM.000088 GlycoMotif

Subsumption

Ancestor G00406II, G08551GM, G21581IH, G82364UA, G84349RE GNOme
BaseComposition G82364UA GNOme
Composition G21581IH GNOme
Descendant G37830TX, G70938LN, G88356HA GNOme
FullyDetermined G37830TX GNOme
Level Topology GNOme
MissingScore 1048 GNOme
Saccharides G37830TX, G70938LN, G88356HA GNOme
SubsumedBy G00406II, G08551GM GNOme
Subsumes G70938LN, G88356HA GNOme
Topology G04281RT GNOme

Glycan Structure

Composition false EdwardsLab
FullyDetermined false EdwardsLab
HasMonosaccharide Fuc, Gal, GalNAc, Glc, Hex, HexNAc, dHex EdwardsLab
HasRepeat false EdwardsLab
ReducingEnd Glc, Hex EdwardsLab
UndeterminedTopology false EdwardsLab