G22208HN

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Sequence

GlycoCT

RES 1b:b-dglc-HEX-1:5 2s:n-acetyl 3b:b-dglc-HEX-1:5 4s:n-acetyl 5b:b-dman-HEX-1:5 6b:a-dman-HEX-1:5 7b:x-dglc-HEX-1:5 8b:x-dgal-HEX-1:5 9s:n-acetyl 10b:a-dman-HEX-1:5 11b:x-dglc-HEX-1:5 12b:x-dgal-HEX-1:5 13b:x-dgro-dgal-NON-2:6|1:a|2:keto|3:d 14s:n-acetyl 15s:n-acetyl 16b:x-dglc-HEX-1:5 17b:x-dgal-HEX-1:5 18b:x-dgro-dgal-NON-2:6|1:a|2:keto|3:d 19s:n-acetyl 20s:n-acetyl 21b:a-lgal-HEX-1:5|6:d LIN 1:1d(2+1)2n 2:1o(4+1)3d 3:3d(2+1)4n 4:3o(4+1)5d 5:5o(3|6+1)6d 6:6o(-1+1)7d 7:7o(-1+1)8d 8:7d(2+1)9n 9:5o(3|6+1)10d 10:10o(-1+1)11d 11:11o(-1+1)12d 12:12o(-1+2)13d 13:13d(5+1)14n 14:11d(2+1)15n 15:10o(-1+1)16d 16:16o(-1+1)17d 17:17o(-1+2)18d 18:18d(5+1)19n 19:16d(2+1)20n 20:1o(6+1)21d

GlyTouCan
GlycoWorkBench

redEnd--?b?D-b-D-Glcp,p((--2NAc)--4b1D-b-D-Glcp,p(--2NAc)--4b1D-b-D-Manp,p(--3/6a1D-a-D-Manp,p(--??1D-?-D-Glcp,p(--2NAc)--??1D-?-D-Galp,p--??2D-?-D-Neup,p--5NAc)--??1D-?-D-Glcp,p(--2NAc)--??1D-?-D-Galp,p--??2D-?-D-Neup,p--5NAc)--3/6a1D-a-D-Manp,p--??1D-?-D-Glcp,p(--2NAc)--??1D-?-D-Galp,p)--6a1L-a-L-Fucp,p$MONO,perMe,Na,0,redEnd

EdwardsLab
IUPAC

?-D-Neup5Ac-(2->?)-?-D-Galp-(1->?)-?-D-GlcpNAc-(1->?)[?-D-Neup5Ac-(2->?)-?-D-Galp-(1->?)-?-D-GlcpNAc-(1->?)]-alpha-D-Manp-(1->3/6)[?-D-Galp-(1->?)-?-D-GlcpNAc-(1->?)-alpha-D-Manp-(1->3/6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-beta-D-GlcpNAc-(1->

EdwardsLab
IUPAC

?-D-Neup5Ac-(2->?)-?-D-Galp-(1->?)-?-D-GlcpNAc-(1->?)[?-D-Neup5Ac-(2->?)-?-D-Galp-(1->?)-?-D-GlcpNAc-(1->?)]-alpha-D-Manp-(1->3/6)[?-D-Galp-(1->?)-?-D-GlcpNAc-(1->?)-alpha-D-Manp-(1->3/6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-beta-D-GlcpNAc-(1->

GlyCosmos
WURCS

WURCS=2.0/7,14,13/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2122h-1x_1-5_2*NCC/3=O][a2112h-1x_1-5][Aad21122h-2x_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-1-2-3-4-5-6-4-5-6-3-4-5-7/a4-b1_a6-n1_b4-c1_d1-c3|c6_k1-c3|c6_d?-e1_d?-h1_e?-f1_f?-g2_h?-i1_i?-j2_k?-l1_l?-m1

GlyTouCan

Taxonomy

Taxonomy 9606 GlyConnectStructure:2575
Taxonomy 9606 UniCarbKB:7629

Species

Human Evidence GlyConnectStructure:2575 TaxID 9606
No N-linked Xyl and no NeuGc, Alt
UniCarbKB:7629 TaxID 9606
EdwardsLab
Mouse Evidence Composition closure of G58848QS via G58076ER
Composition closure of G64048GU via G58076ER
Composition closure of G75977KH via G58076ER
EdwardsLab

Molecular Weight

PermethylatedMW 3392.70866415 EdwardsLab
UnderivitizedMW 2733.97311086 EdwardsLab
UnderivitizedMW 2733.9731097 GlyTouCan

Classification

GlycanSubtype N-linked complex GlycoMotif:GGM.001004
GlycanSubtype N-linked core-fucosylated GlycoMotif:GGM.001024
GlycanType N-linked GlycoMotif:GGM.001004

Monosaccharide Counts

FucCount 1 EdwardsLab
GalCount 3 EdwardsLab
GlcNAcCount 5 EdwardsLab
HexCount 6 EdwardsLab
HexNAcCount 5 EdwardsLab
ManCount 3 EdwardsLab
MonosaccharideCount 14 EdwardsLab
NeuAcCount 2 EdwardsLab
SiaCount 2 EdwardsLab
dHexCount 1 EdwardsLab
MonosaccharideCount 14 GlyTouCan

Cross Reference

GlyGen G22208HN EdwardsLab
GNOme G22208HN GNOme
GlyCosmos G22208HN GlyCosmos
GlyConnectStructure 2575 GlyTouCan
GlyTouCan G22208HN GlyTouCan
UniCarbKB 7629 UniCarbKB

Publications

Publication 19088065, 24279413 UniCarbKB:7629

Glycan Motif

ClassMotif GGM.001001, GGM.001004, GGM.001024, GGM.001027 GlycoMotif
Motif GGM.000001, GGM.000005, GGM.000034 GlycoMotif
StrictClassMotif GGM.001027 GlycoMotif

Subsumption

Ancestor G11629QQ, G23028IO, G25569EP, G26302TI, G29419HY, G36798UJ, G37626QS, G38541LS, G44246UD, G49917IO, G52754KY, G57776ZS, G58076ER, G58232MG, G59699IB, G60282LL, G66150ZZ, G74269EB, G79137JG, G79939YZ, G81670RK, G83654NV, G85144OK, G94571WF GNOme
BaseComposition G25569EP GNOme
Composition G58076ER GNOme
Descendant G16529MG, G18581LO, G38022PE, G39810GC, G62765SF GNOme
FullyDetermined G16529MG, G18581LO, G38022PE, G62765SF GNOme
Level Saccharide GNOme
MissingScore 621 GNOme
SubsumedBy G29419HY, G58232MG, G66150ZZ, G79939YZ GNOme
Subsumes G16529MG, G39810GC GNOme
Topology G29419HY GNOme

Glycan Structure

Composition false EdwardsLab
FullyDetermined false EdwardsLab
HasMonosaccharide Fuc, Gal, GlcNAc, Hex, HexNAc, Man, NeuAc, Sia, dHex EdwardsLab
HasRepeat false EdwardsLab
ReducingEnd GlcNAc, HexNAc EdwardsLab
UndeterminedTopology false EdwardsLab