G29713JZ
Sequence
| GlycoCT | RES 1b:x-dglc-HEX-x:x 2s:n-acetyl 3b:b-dglc-HEX-1:5 4s:n-acetyl 5b:b-dman-HEX-1:5 6b:a-dman-HEX-1:5 7b:b-dglc-HEX-1:5 8s:n-acetyl 9b:b-dglc-HEX-1:5 10s:n-acetyl 11b:b-dglc-HEX-1:5 12s:n-acetyl 13b:a-dman-HEX-1:5 14b:b-dglc-HEX-1:5 15s:n-acetyl 16b:b-dglc-HEX-1:5 17s:n-acetyl 18b:a-lgal-HEX-1:5|6:d LIN 1:1d(2+1)2n 2:1o(4+1)3d 3:3d(2+1)4n 4:3o(4+1)5d 5:5o(3+1)6d 6:6o(2+1)7d 7:7d(2+1)8n 8:6o(4+1)9d 9:9d(2+1)10n 10:5o(4+1)11d 11:11d(2+1)12n 12:5o(6+1)13d 13:13o(2+1)14d 14:14d(2+1)15n 15:13o(6+1)16d 16:16d(2+1)17n 17:1o(6+1)18d |
GlyTouCan |
|---|---|---|
| GlycoWorkBench | redEnd--?D-?-D-Glc((--2NAc)--4b1D-b-D-Glcp,p(--2NAc)--4b1D-b-D-Manp,p((--3a1D-a-D-Manp,p(--2b1D-b-D-Glcp,p--2NAc)--4b1D-b-D-Glcp,p--2NAc)--4b1D-b-D-Glcp,p--2NAc)--6a1D-a-D-Manp,p(--2b1D-b-D-Glcp,p--2NAc)--6b1D-b-D-Glcp,p--2NAc)--6a1L-a-L-Fucp,p$MONO,perMe,Na,0,redEnd |
EdwardsLab |
| IUPAC | beta-D-GlcpNAc-(1->2)[beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->3)[beta-D-GlcpNAc-(1->4)][beta-D-GlcpNAc-(1->2)[beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-?-D-GlcNAc |
EdwardsLab |
| IUPAC | beta-D-GlcpNAc-(1->2)[beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->3)[beta-D-GlcpNAc-(1->4)][beta-D-GlcpNAc-(1->2)[beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-D-GlcNAc |
GlyCosmos |
| WURCS | WURCS=2.0/5,11,10/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5]/1-2-3-4-2-2-2-4-2-2-5/a4-b1_a6-k1_b4-c1_c3-d1_c4-g1_c6-h1_d2-e1_d4-f1_h2-i1_h6-j1 |
GlyTouCan |
Taxonomy
| Taxonomy | 10114 | GlyTouCan:G29713JZ |
|---|
Species
| Human Evidence | Composition closure of G00463XD via G54800IU Composition closure of G02000AU via G54800IU |
EdwardsLab |
|---|---|---|
| Rat Evidence | GlyTouCan:G29713JZ TaxID 10114 No N-linked Xyl and no Alt |
EdwardsLab |
Molecular Weight
| PermethylatedMW | 2548.31465468 | EdwardsLab |
|---|---|---|
| UnderivitizedMW | 2071.78255231 | EdwardsLab |
| UnderivitizedMW | 2071.7825514 | GlyTouCan |
Classification
| GlycanSubtype | N-linked complex | GlycoMotif:GGM.001004 |
|---|---|---|
| GlycanSubtype | N-linked bisected | GlycoMotif:GGM.001023 |
| GlycanSubtype | N-linked core-fucosylated | GlycoMotif:GGM.001024 |
| GlycanType | N-linked | GlycoMotif:GGM.001004 |
Monosaccharide Counts
| FucCount | 1 | EdwardsLab |
|---|---|---|
| GlcNAcCount | 7 | EdwardsLab |
| HexCount | 3 | EdwardsLab |
| HexNAcCount | 7 | EdwardsLab |
| ManCount | 3 | EdwardsLab |
| MonosaccharideCount | 11 | EdwardsLab |
| dHexCount | 1 | EdwardsLab |
| MonosaccharideCount | 11 | GlyTouCan |
Cross Reference
| GlyGen | G29713JZ | EdwardsLab |
|---|---|---|
| GNOme | G29713JZ | GNOme |
| GlyCosmos | G29713JZ | GlyCosmos |
| Carbbank(CCSB) | 14375 | GlyTouCan |
| GLYCOSCIENCES.de | 4040 | GlyTouCan |
| GlyTouCan | G29713JZ | GlyTouCan |
| GlycomeDB | 3034 | GlyTouCan |
Glycan Motif
| ClassMotif | GGM.001001, GGM.001004, GGM.001023, GGM.001024, GGM.001027 | GlycoMotif |
|---|---|---|
| StrictClassMotif | GGM.001001, GGM.001004, GGM.001023 | GlycoMotif |
Subsumption
| Ancestor | G24528MX, G54800IU, G67367OT, G75337UB, G91034CB | GNOme |
|---|---|---|
| BaseComposition | G67367OT | GNOme |
| Composition | G54800IU | GNOme |
| Descendant | G40358EZ, G91827TX | GNOme |
| FullyDetermined | G40358EZ | GNOme |
| Level | Saccharide | GNOme |
| MissingScore | 127 | GNOme |
| SubsumedBy | G75337UB | GNOme |
| Subsumes | G91827TX | GNOme |
| Topology | G75337UB | GNOme |
Glycan Structure
| Composition | false | EdwardsLab |
|---|---|---|
| FullyDetermined | true | EdwardsLab |
| HasMonosaccharide | Fuc, GlcNAc, Hex, HexNAc, Man, dHex | EdwardsLab |
| HasRepeat | false | EdwardsLab |
| ReducingEnd | GlcNAc, HexNAc | EdwardsLab |
| UndeterminedTopology | false | EdwardsLab |