G29713JZ

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Sequence

GlycoCT

RES 1b:x-dglc-HEX-x:x 2s:n-acetyl 3b:b-dglc-HEX-1:5 4s:n-acetyl 5b:b-dman-HEX-1:5 6b:a-dman-HEX-1:5 7b:b-dglc-HEX-1:5 8s:n-acetyl 9b:b-dglc-HEX-1:5 10s:n-acetyl 11b:b-dglc-HEX-1:5 12s:n-acetyl 13b:a-dman-HEX-1:5 14b:b-dglc-HEX-1:5 15s:n-acetyl 16b:b-dglc-HEX-1:5 17s:n-acetyl 18b:a-lgal-HEX-1:5|6:d LIN 1:1d(2+1)2n 2:1o(4+1)3d 3:3d(2+1)4n 4:3o(4+1)5d 5:5o(3+1)6d 6:6o(2+1)7d 7:7d(2+1)8n 8:6o(4+1)9d 9:9d(2+1)10n 10:5o(4+1)11d 11:11d(2+1)12n 12:5o(6+1)13d 13:13o(2+1)14d 14:14d(2+1)15n 15:13o(6+1)16d 16:16d(2+1)17n 17:1o(6+1)18d

GlyTouCan
GlycoWorkBench

redEnd--?D-?-D-Glc((--2NAc)--4b1D-b-D-Glcp,p(--2NAc)--4b1D-b-D-Manp,p((--3a1D-a-D-Manp,p(--2b1D-b-D-Glcp,p--2NAc)--4b1D-b-D-Glcp,p--2NAc)--4b1D-b-D-Glcp,p--2NAc)--6a1D-a-D-Manp,p(--2b1D-b-D-Glcp,p--2NAc)--6b1D-b-D-Glcp,p--2NAc)--6a1L-a-L-Fucp,p$MONO,perMe,Na,0,redEnd

EdwardsLab
IUPAC

beta-D-GlcpNAc-(1->2)[beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->3)[beta-D-GlcpNAc-(1->4)][beta-D-GlcpNAc-(1->2)[beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-?-D-GlcNAc

EdwardsLab
IUPAC

beta-D-GlcpNAc-(1->2)[beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->3)[beta-D-GlcpNAc-(1->4)][beta-D-GlcpNAc-(1->2)[beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-D-GlcNAc

GlyCosmos
WURCS

WURCS=2.0/5,11,10/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5]/1-2-3-4-2-2-2-4-2-2-5/a4-b1_a6-k1_b4-c1_c3-d1_c4-g1_c6-h1_d2-e1_d4-f1_h2-i1_h6-j1

GlyTouCan

Taxonomy

Taxonomy 10114 GlyTouCan:G29713JZ

Species

Human Evidence Composition closure of G00463XD via G54800IU
Composition closure of G02000AU via G54800IU
EdwardsLab
Rat Evidence GlyTouCan:G29713JZ TaxID 10114
No N-linked Xyl and no Alt
EdwardsLab

Molecular Weight

PermethylatedMW 2548.31465468 EdwardsLab
UnderivitizedMW 2071.78255231 EdwardsLab
UnderivitizedMW 2071.7825514 GlyTouCan

Classification

GlycanSubtype N-linked complex GlycoMotif:GGM.001004
GlycanSubtype N-linked bisected GlycoMotif:GGM.001023
GlycanSubtype N-linked core-fucosylated GlycoMotif:GGM.001024
GlycanType N-linked GlycoMotif:GGM.001004

Monosaccharide Counts

FucCount 1 EdwardsLab
GlcNAcCount 7 EdwardsLab
HexCount 3 EdwardsLab
HexNAcCount 7 EdwardsLab
ManCount 3 EdwardsLab
MonosaccharideCount 11 EdwardsLab
dHexCount 1 EdwardsLab
MonosaccharideCount 11 GlyTouCan

Cross Reference

GlyGen G29713JZ EdwardsLab
GNOme G29713JZ GNOme
GlyCosmos G29713JZ GlyCosmos
Carbbank(CCSB) 14375 GlyTouCan
GLYCOSCIENCES.de 4040 GlyTouCan
GlyTouCan G29713JZ GlyTouCan
GlycomeDB 3034 GlyTouCan

Glycan Motif

ClassMotif GGM.001001, GGM.001004, GGM.001023, GGM.001024, GGM.001027 GlycoMotif
StrictClassMotif GGM.001001, GGM.001004, GGM.001023 GlycoMotif

Subsumption

Ancestor G24528MX, G54800IU, G67367OT, G75337UB, G91034CB GNOme
BaseComposition G67367OT GNOme
Composition G54800IU GNOme
Descendant G40358EZ, G91827TX GNOme
FullyDetermined G40358EZ GNOme
Level Saccharide GNOme
MissingScore 127 GNOme
SubsumedBy G75337UB GNOme
Subsumes G91827TX GNOme
Topology G75337UB GNOme

Glycan Structure

Composition false EdwardsLab
FullyDetermined true EdwardsLab
HasMonosaccharide Fuc, GlcNAc, Hex, HexNAc, Man, dHex EdwardsLab
HasRepeat false EdwardsLab
ReducingEnd GlcNAc, HexNAc EdwardsLab
UndeterminedTopology false EdwardsLab