G39810GC

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Sequence

GlycoCT

RES 1b:b-dglc-HEX-1:5 2s:n-acetyl 3b:b-dglc-HEX-1:5 4s:n-acetyl 5b:b-dman-HEX-1:5 6b:a-dman-HEX-1:5 7b:x-dglc-HEX-1:5 8b:x-dgal-HEX-1:5 9b:x-dgro-dgal-NON-2:6|1:a|2:keto|3:d 10s:n-acetyl 11s:n-acetyl 12b:x-dglc-HEX-1:5 13b:x-dgal-HEX-1:5 14b:x-dgro-dgal-NON-2:6|1:a|2:keto|3:d 15s:n-acetyl 16s:n-acetyl 17b:a-dman-HEX-1:5 18b:x-dglc-HEX-1:5 19b:x-dgal-HEX-1:5 20s:n-acetyl 21b:a-lgal-HEX-1:5|6:d LIN 1:1d(2+1)2n 2:1o(4+1)3d 3:3d(2+1)4n 4:3o(4+1)5d 5:5o(3+1)6d 6:6o(-1+1)7d 7:7o(-1+1)8d 8:8o(-1+2)9d 9:9d(5+1)10n 10:7d(2+1)11n 11:6o(-1+1)12d 12:12o(-1+1)13d 13:13o(-1+2)14d 14:14d(5+1)15n 15:12d(2+1)16n 16:5o(6+1)17d 17:17o(-1+1)18d 18:18o(-1+1)19d 19:18d(2+1)20n 20:1o(6+1)21d

GlyTouCan
GlycoWorkBench

redEnd--?b?D-b-D-Glcp,p((--2NAc)--4b1D-b-D-Glcp,p(--2NAc)--4b1D-b-D-Manp,p(--3a1D-a-D-Manp,p(--??1D-?-D-Glcp,p(--2NAc)--??1D-?-D-Galp,p--??2D-?-D-Neup,p--5NAc)--??1D-?-D-Glcp,p(--2NAc)--??1D-?-D-Galp,p--??2D-?-D-Neup,p--5NAc)--6a1D-a-D-Manp,p--??1D-?-D-Glcp,p(--2NAc)--??1D-?-D-Galp,p)--6a1L-a-L-Fucp,p$MONO,perMe,Na,0,redEnd

EdwardsLab
IUPAC

?-D-Neup5Ac-(2->?)-?-D-Galp-(1->?)-?-D-GlcpNAc-(1->?)[?-D-Neup5Ac-(2->?)-?-D-Galp-(1->?)-?-D-GlcpNAc-(1->?)]-alpha-D-Manp-(1->3)[?-D-Galp-(1->?)-?-D-GlcpNAc-(1->?)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-beta-D-GlcpNAc-(1->

EdwardsLab
IUPAC

?-D-Neup5Ac-(2->?)-?-D-Galp-(1->?)-?-D-GlcpNAc-(1->?)[?-D-Neup5Ac-(2->?)-?-D-Galp-(1->?)-?-D-GlcpNAc-(1->?)]-alpha-D-Manp-(1->3)[?-D-Galp-(1->?)-?-D-GlcpNAc-(1->?)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-beta-D-GlcpNAc-(1->

GlyCosmos
WURCS

WURCS=2.0/7,14,13/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2122h-1x_1-5_2*NCC/3=O][a2112h-1x_1-5][Aad21122h-2x_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-1-2-3-4-5-6-4-5-6-3-4-5-7/a4-b1_a6-n1_b4-c1_c3-d1_c6-k1_d?-e1_d?-h1_e?-f1_f?-g2_h?-i1_i?-j2_k?-l1_l?-m1

GlyTouCan

Species

Human Evidence Subsumption of G38022PE
Subsumption of G62765SF
EdwardsLab
Mouse Evidence Composition closure of G58848QS via G58076ER
Composition closure of G64048GU via G58076ER
Composition closure of G75977KH via G58076ER
EdwardsLab

Molecular Weight

PermethylatedMW 3392.70866415 EdwardsLab
UnderivitizedMW 2733.97311086 EdwardsLab
UnderivitizedMW 2733.9731097 GlyTouCan

Classification

GlycanSubtype N-linked complex GlycoMotif:GGM.001004
GlycanSubtype N-linked core-fucosylated GlycoMotif:GGM.001024
GlycanType N-linked GlycoMotif:GGM.001004

Monosaccharide Counts

FucCount 1 EdwardsLab
GalCount 3 EdwardsLab
GlcNAcCount 5 EdwardsLab
HexCount 6 EdwardsLab
HexNAcCount 5 EdwardsLab
ManCount 3 EdwardsLab
MonosaccharideCount 14 EdwardsLab
NeuAcCount 2 EdwardsLab
SiaCount 2 EdwardsLab
dHexCount 1 EdwardsLab
MonosaccharideCount 14 GlyTouCan

Cross Reference

GlyGen G39810GC EdwardsLab
GNOme G39810GC GNOme
GlyCosmos G39810GC GlyCosmos
GlyTouCan G39810GC GlyTouCan
GlycomeDB 41078 GlyTouCan

Glycan Motif

ClassMotif GGM.001001, GGM.001004, GGM.001024, GGM.001027 GlycoMotif
Motif GGM.000001, GGM.000005, GGM.000034 GlycoMotif
StrictClassMotif GGM.001001, GGM.001024, GGM.001027 GlycoMotif

Subsumption

Ancestor G00553AN, G01450UB, G11629QQ, G22208HN, G23028IO, G25569EP, G26302TI, G29419HY, G36798UJ, G37626QS, G38541LS, G44246UD, G49917IO, G52754KY, G57776ZS, G58076ER, G58232MG, G59699IB, G60282LL, G66150ZZ, G74269EB, G79137JG, G79939YZ, G81670RK, G83654NV, G85144OK, G94571WF, G94737YG GNOme
BaseComposition G25569EP GNOme
Composition G58076ER GNOme
Descendant G18581LO, G38022PE, G62765SF GNOme
FullyDetermined G18581LO, G38022PE, G62765SF GNOme
Level Saccharide GNOme
MissingScore 596 GNOme
SubsumedBy G00553AN, G01450UB, G22208HN, G94737YG GNOme
Subsumes G18581LO, G38022PE, G62765SF GNOme
Topology G29419HY GNOme

Glycan Structure

Composition false EdwardsLab
FullyDetermined false EdwardsLab
HasMonosaccharide Fuc, Gal, GlcNAc, Hex, HexNAc, Man, NeuAc, Sia, dHex EdwardsLab
HasRepeat false EdwardsLab
ReducingEnd GlcNAc, HexNAc EdwardsLab
UndeterminedTopology false EdwardsLab