G48818KL

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Sequence

GlycoCT

RES 1b:a-dgal-HEX-1:5 2s:n-acetyl 3b:x-dgal-HEX-1:5 4b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d 5s:n-acetyl LIN 1:1d(2+1)2n 2:1o(3+1)3d 3:3o(3+2)4d 4:4d(5+1)5n

GlyTouCan
GlycoWorkBench

redEnd--?a?D-a-D-Galp,p(--2NAc)--3?1D-?-D-Galp,p--3a2D-a-D-Neup,p--5NAc$MONO,perMe,Na,0,redEnd

EdwardsLab
IUPAC

alpha-D-Neup5Ac-(2->3)-?-D-Galp-(1->3)-alpha-D-GalpNAc-(1->

EdwardsLab
IUPAC

alpha-D-Neup5Ac-(2->3)-?-D-Galp-(1->3)-alpha-D-GalpNAc-(1->

GlyCosmos
WURCS

WURCS=2.0/3,3,2/[a2112h-1a_1-5_2*NCC/3=O][a2112h-1x_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3/a3-b1_b3-c2

GlyTouCan

Taxonomy

Taxonomy 9606 GlyConnectStructure:800
Taxonomy 9606 UniCarbKB:180

Species

HCV Evidence Composition closure of G72008IY via G19671XU EdwardsLab
Human Evidence GlyConnectStructure:800 TaxID 9606
No N-linked Xyl and no NeuGc, Alt
UniCarbKB:180 TaxID 9606
EdwardsLab
Mouse Evidence Subsumption of G65562ZE EdwardsLab
Rat Evidence Subsumption of G65562ZE EdwardsLab

Molecular Weight

PermethylatedMW 856.44162835 EdwardsLab
UnderivitizedMW 674.23817744 EdwardsLab
UnderivitizedMW 674.23817714 GlyTouCan

Classification

GlycanSubtype O-linked core 1 GlycoMotif:GGM.001005
GlycanType O-linked GlycoMotif:GGM.001005

Monosaccharide Counts

GalCount 1 EdwardsLab
GalNAcCount 1 EdwardsLab
HexCount 1 EdwardsLab
HexNAcCount 1 EdwardsLab
MonosaccharideCount 3 EdwardsLab
NeuAcCount 1 EdwardsLab
SiaCount 1 EdwardsLab
MonosaccharideCount 3 GlyTouCan

Cross Reference

GlyGen G48818KL EdwardsLab
GNOme G48818KL GNOme
GlyCosmos G48818KL GlyCosmos
GlyConnectStructure 800 GlyTouCan
GlyTouCan G48818KL GlyTouCan
UniCarbKB 180 UniCarbKB

Publications

Publication 8631363 UniCarbKB:180

Glycan Motif

ClassMotif GGM.001005, GGM.001006 GlycoMotif
Motif GGM.000013 GlycoMotif

Subsumption

Ancestor G05102QO, G10746HE, G14227RA, G17015OC, G18717LR, G19671XU, G22312GP, G23384FD, G26805JF, G45827ZM, G46252BF, G48480DJ, G48905NO, G51518AE, G51931HC, G52497NM, G52887ZR, G53726DG, G54094BQ, G54793ND, G59133KF, G65180FA, G73319KU, G74722FL, G85924HA, G93485RL, G97771XJ GNOme
BaseComposition G22312GP GNOme
Composition G19671XU GNOme
Descendant G65562ZE GNOme
FullyDetermined G65562ZE GNOme
Level Saccharide GNOme
MissingScore 233 GNOme
SubsumedBy G48905NO, G52887ZR GNOme
Subsumes G65562ZE GNOme
Topology G85924HA GNOme

Glycan Structure

Composition false EdwardsLab
FullyDetermined false EdwardsLab
HasMonosaccharide Gal, GalNAc, Hex, HexNAc, NeuAc, Sia EdwardsLab
HasRepeat false EdwardsLab
ReducingEnd GalNAc, HexNAc EdwardsLab
UndeterminedTopology false EdwardsLab