G64936OS

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Sequence

GlycoCT

RES 1b:x-dglc-HEX-1:5 2s:n-acetyl 3b:b-dglc-HEX-1:5 4s:n-acetyl 5b:b-dman-HEX-1:5 6b:a-dman-HEX-1:5 7b:b-dglc-HEX-1:5 8s:n-acetyl 9b:b-dgal-HEX-1:5 10b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d 11s:n-acetyl 12b:a-dman-HEX-1:5 13b:b-dglc-HEX-1:5 14s:n-acetyl 15b:b-dgal-HEX-1:5 16b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d 17s:n-acetyl 18b:b-dglc-HEX-1:5 19s:n-acetyl 20b:b-dgal-HEX-1:5 21b:a-lgal-HEX-1:5|6:d LIN 1:1d(2+1)2n 2:1o(4+1)3d 3:3d(2+1)4n 4:3o(4+1)5d 5:5o(3+1)6d 6:6o(2+1)7d 7:7d(2+1)8n 8:7o(4+1)9d 9:9o(6+2)10d 10:10d(5+1)11n 11:5o(6+1)12d 12:12o(2+1)13d 13:13d(2+1)14n 14:13o(4+1)15d 15:15o(3+2)16d 16:16d(5+1)17n 17:12o(6+1)18d 18:18d(2+1)19n 19:18o(4+1)20d 20:1o(6+1)21d

EdwardsLab
GlycoCT-XML

<?xml version='1.0' encoding='UTF-8'?> <sugar version="1.0">   <residues>     <monosaccharide anomer="x" id="1" name="x-dglc-HEX-1:5" ringEnd="5" ringStart="1" superclass="hex" type="b">       <basetype id="1" type="dglc" />     </monosaccharide>     <substituent id="2" name="n-acetyl" type="s" />     <monosaccharide anomer="b" id="3" name="b-dglc-HEX-1:5" ringEnd="5" ringStart="1" superclass="hex" type="b">       <basetype id="1" type="dglc" />     </monosaccharide>     <substituent id="4" name="n-acetyl" type="s" />     <monosaccharide anomer="b" id="5" name="b-dman-HEX-1:5" ringEnd="5" ringStart="1" superclass="hex" type="b">       <basetype id="1" type="dman" />     </monosaccharide>     <monosaccharide anomer="a" id="6" name="a-dman-HEX-1:5" ringEnd="5" ringStart="1" superclass="hex" type="b">       <basetype id="1" type="dman" />     </monosaccharide>     <monosaccharide anomer="b" id="7" name="b-dglc-HEX-1:5" ringEnd="5" ringStart="1" superclass="hex" type="b">       <basetype id="1" type="dglc" />     </monosaccharide>     <substituent id="8" name="n-acetyl" type="s" />     <monosaccharide anomer="b" id="9" name="b-dgal-HEX-1:5" ringEnd="5" ringStart="1" superclass="hex" type="b">       <basetype id="1" type="dgal" />     </monosaccharide>     <monosaccharide anomer="a" id="10" name="a-dgro-dgal-NON-2:6|1:a|2:keto|3:d" ringEnd="6" ringStart="2" superclass="non" type="b">       <basetype id="1" type="dgro" />       <basetype id="2" type="dgal" />       <modification pos_one="1" type="a" />       <modification pos_one="2" type="keto" />       <modification pos_one="3" type="d" />     </monosaccharide>     <substituent id="11" name="n-acetyl" type="s" />     <monosaccharide anomer="a" id="12" name="a-dman-HEX-1:5" ringEnd="5" ringStart="1" superclass="hex" type="b">       <basetype id="1" type="dman" />     </monosaccharide>     <monosaccharide anomer="b" id="13" name="b-dglc-HEX-1:5" ringEnd="5" ringStart="1" superclass="hex" type="b">       <basetype id="1" type="dglc" />     </monosaccharide>     <substituent id="14" name="n-acetyl" type="s" />     <monosaccharide anomer="b" id="15" name="b-dgal-HEX-1:5" ringEnd="5" ringStart="1" superclass="hex" type="b">       <basetype id="1" type="dgal" />     </monosaccharide>     <monosaccharide anomer="a" id="16" name="a-dgro-dgal-NON-2:6|1:a|2:keto|3:d" ringEnd="6" ringStart="2" superclass="non" type="b">       <basetype id="1" type="dgro" />       <basetype id="2" type="dgal" />       <modification pos_one="1" type="a" />       <modification pos_one="2" type="keto" />       <modification pos_one="3" type="d" />     </monosaccharide>     <substituent id="17" name="n-acetyl" type="s" />     <monosaccharide anomer="b" id="18" name="b-dglc-HEX-1:5" ringEnd="5" ringStart="1" superclass="hex" type="b">       <basetype id="1" type="dglc" />     </monosaccharide>     <substituent id="19" name="n-acetyl" type="s" />     <monosaccharide anomer="b" id="20" name="b-dgal-HEX-1:5" ringEnd="5" ringStart="1" superclass="hex" type="b">       <basetype id="1" type="dgal" />     </monosaccharide>     <monosaccharide anomer="a" id="21" name="a-lgal-HEX-1:5|6:d" ringEnd="5" ringStart="1" superclass="hex" type="b">       <basetype id="1" type="lgal" />       <modification pos_one="6" type="d" />     </monosaccharide>   </residues>   <linkages>     <connection child="2" id="1" parent="1">       <linkage childType="n" id="1" parentType="d">         <parent pos="2" />         <child pos="1" />       </linkage>     </connection>     <connection child="3" id="2" parent="1">       <linkage childType="d" id="2" parentType="o">         <parent pos="4" />         <child pos="1" />       </linkage>     </connection>     <connection child="4" id="3" parent="3">       <linkage childType="n" id="3" parentType="d">         <parent pos="2" />         <child pos="1" />       </linkage>     </connection>     <connection child="5" id="4" parent="3">       <linkage childType="d" id="4" parentType="o">         <parent pos="4" />         <child pos="1" />       </linkage>     </connection>     <connection child="6" id="5" parent="5">       <linkage childType="d" id="5" parentType="o">         <parent pos="3" />         <child pos="1" />       </linkage>     </connection>     <connection child="7" id="6" parent="6">       <linkage childType="d" id="6" parentType="o">         <parent pos="2" />         <child pos="1" />       </linkage>     </connection>     <connection child="8" id="7" parent="7">       <linkage childType="n" id="7" parentType="d">         <parent pos="2" />         <child pos="1" />       </linkage>     </connection>     <connection child="9" id="8" parent="7">       <linkage childType="d" id="8" parentType="o">         <parent pos="4" />         <child pos="1" />       </linkage>     </connection>     <connection child="10" id="9" parent="9">       <linkage childType="d" id="9" parentType="o">         <parent pos="6" />         <child pos="2" />       </linkage>     </connection>     <connection child="11" id="10" parent="10">       <linkage childType="n" id="10" parentType="d">         <parent pos="5" />         <child pos="1" />       </linkage>     </connection>     <connection child="12" id="11" parent="5">       <linkage childType="d" id="11" parentType="o">         <parent pos="6" />         <child pos="1" />       </linkage>     </connection>     <connection child="13" id="12" parent="12">       <linkage childType="d" id="12" parentType="o">         <parent pos="2" />         <child pos="1" />       </linkage>     </connection>     <connection child="14" id="13" parent="13">       <linkage childType="n" id="13" parentType="d">         <parent pos="2" />         <child pos="1" />       </linkage>     </connection>     <connection child="15" id="14" parent="13">       <linkage childType="d" id="14" parentType="o">         <parent pos="4" />         <child pos="1" />       </linkage>     </connection>     <connection child="16" id="15" parent="15">       <linkage childType="d" id="15" parentType="o">         <parent pos="3" />         <child pos="2" />       </linkage>     </connection>     <connection child="17" id="16" parent="16">       <linkage childType="n" id="16" parentType="d">         <parent pos="5" />         <child pos="1" />       </linkage>     </connection>     <connection child="18" id="17" parent="12">       <linkage childType="d" id="17" parentType="o">         <parent pos="6" />         <child pos="1" />       </linkage>     </connection>     <connection child="19" id="18" parent="18">       <linkage childType="n" id="18" parentType="d">         <parent pos="2" />         <child pos="1" />       </linkage>     </connection>     <connection child="20" id="19" parent="18">       <linkage childType="d" id="19" parentType="o">         <parent pos="4" />         <child pos="1" />       </linkage>     </connection>     <connection child="21" id="20" parent="1">       <linkage childType="d" id="20" parentType="o">         <parent pos="6" />         <child pos="1" />       </linkage>     </connection>   </linkages> </sugar>

EdwardsLab
GlycoWorkBench

freeEnd--1?1D-GlcNAc,p(--4b1D-GlcNAc,p--4b1D-Man,p(--3a1D-Man,p--2b1D-GlcNAc,p--4b1D-Gal,p--6a2D-NeuAc,p)--6a1D-Man,p(--2b1D-GlcNAc,p--4b1D-Gal,p--3a2D-NeuAc,p)--6b1D-GlcNAc,p--4b1D-Gal,p)--6a1L-Fuc,p$MONO,Und,0,0,freeEnd

EdwardsLab
IUPAC

alpha-D-Neup5Ac-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)[alpha-D-Neup5Ac-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-?-D-GlcpNAc-(1->

EdwardsLab
IUPAC

alpha-D-Neup5Ac-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)[alpha-D-Neup5Ac-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-?-D-GlcpNAc-(1->

GlyCosmos
WURCS

WURCS=2.0/7,14,13/[a2122h-1x_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-2-3-4-2-5-6-4-2-5-6-2-5-7/a4-b1_a6-n1_b4-c1_c3-d1_c6-h1_d2-e1_e4-f1_f6-g2_h2-i1_h6-l1_i4-j1_j3-k2_l4-m1

GlyTouCan

Species

Human Evidence Composition closure of G00553AN via G58076ER
Composition closure of G00800WJ via G58076ER
Composition closure of G01450UB via G58076ER
Composition closure of G01543ZX via G58076ER
Composition closure of G10228OD via G58076ER
Composition closure of G16150CJ via G58076ER
Composition closure of G16529MG via G58076ER
Composition closure of G21454AE via G58076ER
Composition closure of G22208HN via G58076ER
Composition closure of G25713RA via G58076ER
Composition closure of G31341PC via G58076ER
Composition closure of G37306TB via G58076ER
Composition closure of G38022PE via G58076ER
Composition closure of G41929NX via G58076ER
Composition closure of G42686NQ via G58076ER
Composition closure of G45661NA via G58076ER
Composition closure of G47961DI via G58076ER
Composition closure of G58232MG via G58076ER
Composition closure of G61575RT via G58076ER
Composition closure of G62765SF via G58076ER
Composition closure of G72356VO via G58076ER
Composition closure of G72580QS via G58076ER
Composition closure of G74239ZQ via G58076ER
Composition closure of G79939YZ via G58076ER
Composition closure of G80537QW via G58076ER
Composition closure of G91905FJ via G58076ER
Composition closure of G94737YG via G58076ER
Composition closure of G96503EZ via G58076ER
Composition closure of G96916QO via G58076ER
Composition closure of G97123TW via G58076ER 		EdwardsLab
Mouse Evidence Composition closure of G00553AN via G58076ER
Composition closure of G00800WJ via G58076ER
Composition closure of G06215XQ via G58076ER
Composition closure of G10228OD via G58076ER
Composition closure of G16150CJ via G58076ER
Composition closure of G16529MG via G58076ER
Composition closure of G22208HN via G58076ER
Composition closure of G38022PE via G58076ER
Composition closure of G42686NQ via G58076ER
Composition closure of G58232MG via G58076ER
Composition closure of G58848QS via G58076ER
Composition closure of G62765SF via G58076ER
Composition closure of G64048GU via G58076ER
Composition closure of G72580QS via G58076ER
Composition closure of G75977KH via G58076ER
Composition closure of G79939YZ via G58076ER
Composition closure of G80537QW via G58076ER
Composition closure of G91905FJ via G58076ER
Composition closure of G94737YG via G58076ER
Composition closure of G96503EZ via G58076ER 		EdwardsLab

Molecular Weight

PermethylatedMW 3392.70866415 EdwardsLab
UnderivitizedMW 2733.97311086 EdwardsLab

Molecular Formula

NativeMolecularFormula C104H169N7O75 EdwardsLab
PermethylatedMolecularFormula C149H259N7O75 EdwardsLab

Classification

GlycanSubtype N-linked complex GlycoMotif:GGM.001004
GlycanSubtype N-linked core-fucosylated GlycoMotif:GGM.001024
GlycanType N-linked GlycoMotif:GGM.001004

Monosaccharide Counts

FucCount 1 EdwardsLab
GalCount 3 EdwardsLab
GlcNAcCount 5 EdwardsLab
HexCount 6 EdwardsLab
HexNAcCount 5 EdwardsLab
ManCount 3 EdwardsLab
MonosaccharideCount 14 EdwardsLab
NeuAcCount 2 EdwardsLab
SiaCount 2 EdwardsLab
dHexCount 1 EdwardsLab

Cross Reference

GlyGen G64936OS EdwardsLab
GNOme G64936OS GNOme
GlyCosmos G64936OS GlyCosmos
GlyTouCan G64936OS GlyTouCan

Glycan Motif

ClassMotif GGM.001001, GGM.001004, GGM.001024, GGM.001027 GlycoMotif
Motif GGM.000001, GGM.000034 GlycoMotif
StrictClassMotif GGM.001001, GGM.001004, GGM.001024, GGM.001027 GlycoMotif
StrictMotif GGM.000001, GGM.000034 GlycoMotif

Subsumption

Ancestor G05314WL, G10159DR, G11629QQ, G15212GE, G20326YW, G23028IO, G23658WM, G25569EP, G26302TI, G26985YI, G31219GT, G37626QS, G38541LS, G44246UD, G49917IO, G57776ZS, G58076ER, G59699IB, G60282LL, G62220SM, G74269EB, G81604RU, G81670RK, G85144OK, G94571WF GNOme
BaseComposition G25569EP GNOme
Composition G58076ER GNOme
Level Saccharide GNOme
MissingScore 70 GNOme
SubsumedBy G20326YW, G23658WM, G26985YI, G31219GT, G38541LS GNOme
Topology G05314WL GNOme

Glycan Structure

Composition false EdwardsLab
FullyDetermined true EdwardsLab
HasMonosaccharide Fuc, Gal, GlcNAc, Hex, HexNAc, Man, NeuAc, Sia, dHex EdwardsLab
HasRepeat false EdwardsLab
ReducingEnd GlcNAc, HexNAc EdwardsLab
UndeterminedTopology false EdwardsLab
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