G85144OK

From GlycanData
Jump to navigation Jump to search

Names

Byonic HexNAc(5)Hex(6)dHex(1)NeuAc(2) EdwardsLab
ShortUniCarbKB HexNAc5Hex6dHex1NeuAc2 EdwardsLab
UniCarbKB HexNAc5Hex6dHex1NeuAc2NeuGc0Pent0S0P0KDN0HexA0 EdwardsLab

Sequence

GlycoCT

RES 1b:x-HEX-x:x 2b:x-HEX-x:x 3b:x-HEX-x:x 4b:x-HEX-x:x 5b:x-HEX-x:x 6b:x-HEX-x:x 7b:x-HEX-x:x|6:d 8b:x-dgro-dgal-NON-x:x|1:a|2:keto|3:d 9s:n-acetyl 10b:x-dgro-dgal-NON-x:x|1:a|2:keto|3:d 11s:n-acetyl 12b:x-HEX-x:x 13s:n-acetyl 14b:x-HEX-x:x 15s:n-acetyl 16b:x-HEX-x:x 17s:n-acetyl 18b:x-HEX-x:x 19s:n-acetyl 20b:x-HEX-x:x 21s:n-acetyl LIN 1:8d(5+1)9n 2:10d(5+1)11n 3:12d(2+1)13n 4:14d(2+1)15n 5:16d(2+1)17n 6:18d(2+1)19n 7:20d(2+1)21n

EdwardsLab
WURCS

WURCS=2.0/4,14,13/[AUd21122h_5*NCC/3=O][uxxxxm][uxxxxh_2*NCC/3=O][uxxxxh]/1-1-2-3-3-3-3-3-4-4-4-4-4-4/a?|b?|c?|d?|e?|f?|g?|h?|i?|j?|k?|l?|m?|n?}-{a?|b?|c?|d?|e?|f?|g?|h?|i?|j?|k?|l?|m?|n?_a?|b?|c?|d?|e?|f?|g?|h?|i?|j?|k?|l?|m?|n?}-{a?|b?|c?|d?|e?|f?|g?|h?|i?|j?|k?|l?|m?|n?_a?|b?|c?|d?|e?|f?|g?|h?|i?|j?|k?|l?|m?|n?}-{a?|b?|c?|d?|e?|f?|g?|h?|i?|j?|k?|l?|m?|n?_a?|b?|c?|d?|e?|f?|g?|h?|i?|j?|k?|l?|m?|n?}-{a?|b?|c?|d?|e?|f?|g?|h?|i?|j?|k?|l?|m?|n?_a?|b?|c?|d?|e?|f?|g?|h?|i?|j?|k?|l?|m?|n?}-{a?|b?|c?|d?|e?|f?|g?|h?|i?|j?|k?|l?|m?|n?_a?|b?|c?|d?|e?|f?|g?|h?|i?|j?|k?|l?|m?|n?}-{a?|b?|c?|d?|e?|f?|g?|h?|i?|j?|k?|l?|m?|n?_a?|b?|c?|d?|e?|f?|g?|h?|i?|j?|k?|l?|m?|n?}-{a?|b?|c?|d?|e?|f?|g?|h?|i?|j?|k?|l?|m?|n?_a?|b?|c?|d?|e?|f?|g?|h?|i?|j?|k?|l?|m?|n?}-{a?|b?|c?|d?|e?|f?|g?|h?|i?|j?|k?|l?|m?|n?_a?|b?|c?|d?|e?|f?|g?|h?|i?|j?|k?|l?|m?|n?}-{a?|b?|c?|d?|e?|f?|g?|h?|i?|j?|k?|l?|m?|n?_a?|b?|c?|d?|e?|f?|g?|h?|i?|j?|k?|l?|m?|n?}-{a?|b?|c?|d?|e?|f?|g?|h?|i?|j?|k?|l?|m?|n?_a?|b?|c?|d?|e?|f?|g?|h?|i?|j?|k?|l?|m?|n?}-{a?|b?|c?|d?|e?|f?|g?|h?|i?|j?|k?|l?|m?|n?_a?|b?|c?|d?|e?|f?|g?|h?|i?|j?|k?|l?|m?|n?}-{a?|b?|c?|d?|e?|f?|g?|h?|i?|j?|k?|l?|m?|n?_a?|b?|c?|d?|e?|f?|g?|h?|i?|j?|k?|l?|m?|n?}-{a?|b?|c?|d?|e?|f?|g?|h?|i?|j?|k?|l?|m?|n?

GlyTouCan

Taxonomy

Taxonomy 2697049 GLYDS000479
Taxonomy 9606 GPTwiki:G85144OK
Taxonomy 9606, 2697049 UniCarbKB:comp_HexNAc5Hex6dHex1NeuAc2NeuGc0Pent0S0P0KDN0HexA0

Species

Human Evidence GPTwiki:G85144OK TaxID 9606
No N-linked Xyl and no NeuGc, Alt
UniCarbKB:comp_HexNAc5Hex6dHex1NeuAc2NeuGc0Pent0S0P0KDN0HexA0 TaxID 9606
EdwardsLab
Mouse Evidence Subsumption of G11629QQ
Subsumption of G45996VR
Subsumption of G58848QS
Subsumption of G64048GU
Subsumption of G64076LG
Subsumption of G75977KH
EdwardsLab
Rat Evidence Subsumption of G11629QQ
Subsumption of G52754KY
EdwardsLab
SARS Evidence GLYDS000479 TaxID 2697049
UniCarbKB:comp_HexNAc5Hex6dHex1NeuAc2NeuGc0Pent0S0P0KDN0HexA0 TaxID 2697049
EdwardsLab

Molecular Weight

PermethylatedMW 3392.70866415 EdwardsLab
UnderivitizedMW 2733.97311086 EdwardsLab
UnderivitizedMW 2733.9731097 GlyTouCan

Classification

GlycanSubtype N-linked bisected, N-linked complex, N-linked core-fucosylated Subsumption:G00553AN
GlycanSubtype N-linked arm-fucosylated Subsumption:G05247AF
GlycanType N-linked Subsumption:G00553AN

Monosaccharide Counts

HexCount 6 EdwardsLab
HexNAcCount 5 EdwardsLab
MonosaccharideCount 14 EdwardsLab
NeuAcCount 2 EdwardsLab
SiaCount 2 EdwardsLab
dHexCount 1 EdwardsLab
MonosaccharideCount 14 GlyTouCan

Cross Reference

GlyGen G85144OK EdwardsLab
GNOme G85144OK GNOme
GlyCosmos G85144OK GlyCosmos
GlyTouCan G85144OK GlyTouCan
UniCarbKB comp_HexNAc5Hex6dHex1NeuAc2NeuGc0Pent0S0P0KDN0HexA0 UniCarbKB

Publications

Publication 23345538, 24393138, 26791533, 29671580, 32366695, 32841605, 32886791 UniCarbKB:comp_HexNAc5Hex6dHex1NeuAc2NeuGc0Pent0S0P0KDN0HexA0

Subsumption

Ancestor G25569EP GNOme
BaseComposition G25569EP GNOme
Composition G85144OK GNOme
Descendant G00553AN, G00662UH, G00800WJ, G01077MO, G01354KL, G01450UB, G01543ZX, G03075ZE, G03196WF, G04823YN, G05005SO, G05247AF, G05314WL, G05797TN, G06215XQ, G07003AA, G10159DR, G10228OD, G10351WH, G10794HZ, G11629QQ, G12425WW, G13450PJ, G14740XE, G15212GE, G15730FJ, G16150CJ, G16529MG, G16823AW, G17431SG, G18581LO, G18724OW, G19854PG, G20510FY, G20652QD, G20919FV, G21454AE, G22208HN, G22427ZK, G23028IO, G24857RT, G25363AJ, G25460BQ, G25713RA, G26302TI, G26985YI, G28149YN, G29419HY, G29454KU, G31219GT, G31341PC, G31662BR, G32510IZ, G32590TH, G35740ZG, G36551EV, G36798UJ, G37306TB, G37626QS, G37812PU, G38022PE, G38541LS, G39810GC, G41929NX, G42060JY, G42686NQ, G43192WZ, G43339ZY, G44246UD, G44361OH, G44754IE, G45661NA, G45720CA, G45996VR, G46453OL, G46668VT, G47280HM, G47961DI, G47963XB, G48789OQ, G49235GA, G49917IO, G50554LM, G50782LR, G52754KY, G53818ZZ, G54338PJ, G56770AH, G57776ZS, G58025LK, G58076ER, G58232MG, G58301SF, G58571IP, G58848QS, G59345UT, G59699IB, G60282LL, G61575RT, G62232OO, G62765SF, G64048GU, G64076LG, G64808RJ, G64851PW, G64936OS, G65079ZY, G66150ZZ, G66708DB, G72111PC, G72356VO, G72580QS, G74239ZQ, G74269EB, G74907KF, G75490BT, G75977KH, G77451VF, G78608GK, G79088GV, G79137JG, G79939YZ, G80537QW, G81604RU, G81670RK, G81874XM, G83165OA, G83654NV, G84223RT, G84981PB, G86763VI, G87489PB, G87519TU, G87639RD, G89378UY, G89425XZ, G89641ZV, G89704JD, G90669BC, G91905FJ, G92057EA, G93563JK, G94571WF, G94737YG, G96503EZ, G96916QO, G97123TW GNOme
FullyDetermined G01354KL, G03075ZE, G10228OD, G16150CJ, G16529MG, G18581LO, G19854PG, G31662BR, G38022PE, G42686NQ, G45720CA, G47280HM, G47963XB, G50554LM, G61575RT, G62765SF, G65079ZY, G72580QS, G79088GV, G80537QW, G91905FJ, G96503EZ GNOme
Level Composition GNOme
MissingScore 7721 GNOme
SubsumedBy G25569EP GNOme
Subsumes G10159DR, G11629QQ, G46668VT, G57776ZS, G72111PC, G83654NV, G93563JK GNOme
Topologies G10159DR, G46668VT, G72111PC, G83654NV GNOme

Glycan Structure

Composition true EdwardsLab
FullyDetermined false EdwardsLab
HasMonosaccharide Hex, HexNAc, NeuAc, Sia, dHex EdwardsLab
HasRepeat false EdwardsLab
UndeterminedTopology false EdwardsLab