G86504RY

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Sequence

GlycoCT

RES 1b:x-dglc-HEX-1:5 2s:n-acetyl 3b:b-dglc-HEX-1:5 4s:n-acetyl 5b:b-dman-HEX-1:5 6b:a-dman-HEX-1:5 7b:b-dglc-HEX-1:5 8s:n-acetyl 9b:b-dgal-HEX-1:5 10s:n-acetyl 11b:b-dglc-HEX-1:5 12s:n-acetyl 13b:a-dman-HEX-1:5 14b:b-dglc-HEX-1:5 15s:n-acetyl 16b:b-dgal-HEX-1:5 17s:n-acetyl 18b:a-lgal-HEX-1:5|6:d LIN 1:1d(2+1)2n 2:1o(4+1)3d 3:3d(2+1)4n 4:3o(4+1)5d 5:5o(3+1)6d 6:6o(2+1)7d 7:7d(2+1)8n 8:7o(4+1)9d 9:9d(2+1)10n 10:6o(4+1)11d 11:11d(2+1)12n 12:5o(6+1)13d 13:13o(2+1)14d 14:14d(2+1)15n 15:14o(4+1)16d 16:16d(2+1)17n 17:1o(6+1)18d

GlyTouCan
GlycoWorkBench

redEnd--?D-?-D-Glcp,p((--2NAc)--4b1D-b-D-Glcp,p(--2NAc)--4b1D-b-D-Manp,p(--3a1D-a-D-Manp,p(--2b1D-b-D-Glcp,p(--2NAc)--4b1D-b-D-Galp,p--2NAc)--4b1D-b-D-Glcp,p--2NAc)--6a1D-a-D-Manp,p--2b1D-b-D-Glcp,p(--2NAc)--4b1D-b-D-Galp,p--2NAc)--6a1L-a-L-Fucp,p$MONO,perMe,Na,0,redEnd

EdwardsLab
IUPAC

beta-D-GalpNAc-(1->4)-beta-D-GlcpNAc-(1->2)[beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->3)[beta-D-GalpNAc-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-?-D-GlcpNAc-(1->

EdwardsLab
IUPAC

beta-D-GalpNAc-(1->4)-beta-D-GlcpNAc-(1->2)[beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->3)[beta-D-GalpNAc-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-?-D-GlcpNAc-(1->

GlyCosmos
WURCS

WURCS=2.0/6,11,10/[a2122h-1x_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5]/1-2-3-4-2-5-2-4-2-5-6/a4-b1_a6-k1_b4-c1_c3-d1_c6-h1_d2-e1_d4-g1_e4-f1_h2-i1_i4-j1

GlyTouCan

Taxonomy

Taxonomy 9606 GlyTouCan:G86504RY

Species

Human Evidence GlyTouCan:G86504RY TaxID 9606
No N-linked Xyl and no NeuGc, Alt
EdwardsLab

Molecular Weight

PermethylatedMW 2548.31465468 EdwardsLab
UnderivitizedMW 2071.78255231 EdwardsLab
UnderivitizedMW 2071.7825514 GlyTouCan

Classification

GlycanSubtype N-linked complex GlycoMotif:GGM.001004
GlycanSubtype N-linked core-fucosylated GlycoMotif:GGM.001024
GlycanType N-linked GlycoMotif:GGM.001004

Monosaccharide Counts

FucCount 1 EdwardsLab
GalNAcCount 2 EdwardsLab
GlcNAcCount 5 EdwardsLab
HexCount 3 EdwardsLab
HexNAcCount 7 EdwardsLab
ManCount 3 EdwardsLab
MonosaccharideCount 11 EdwardsLab
dHexCount 1 EdwardsLab
MonosaccharideCount 11 GlyTouCan

Cross Reference

GlyGen G86504RY EdwardsLab
GNOme G86504RY GNOme
GlyCosmos G86504RY GlyCosmos
CFG carbNlink_21235_D000 GlyTouCan
GlyTouCan G86504RY GlyTouCan
GlycomeDB 19019 GlyTouCan
KEGG G02756 GlyTouCan
PubChem CID71297487, SID252291517 GlyTouCan

Glycan Motif

ClassMotif GGM.001001, GGM.001004, GGM.001024, GGM.001027 GlycoMotif
Motif GGM.000016 GlycoMotif
StrictClassMotif GGM.001001, GGM.001004, GGM.001024, GGM.001027 GlycoMotif
StrictMotif GGM.000016 GlycoMotif

Subsumption

Ancestor G24528MX, G27669RW, G29362FG, G32332VU, G38266JX, G54278KA, G67367OT, G68727RT, G87814KJ, G90083OQ, G91034CB, G97100SS GNOme
BaseComposition G67367OT GNOme
Composition G87814KJ GNOme
Descendant G59361OW GNOme
FullyDetermined G59361OW GNOme
Level Saccharide GNOme
MissingScore 63 GNOme
SubsumedBy G27669RW, G38266JX, G90083OQ GNOme
Subsumes G59361OW GNOme
Topology G38266JX GNOme

Glycan Structure

Composition false EdwardsLab
FullyDetermined true EdwardsLab
HasMonosaccharide Fuc, GalNAc, GlcNAc, Hex, HexNAc, Man, dHex EdwardsLab
HasRepeat false EdwardsLab
ReducingEnd GlcNAc, HexNAc EdwardsLab
UndeterminedTopology false EdwardsLab