G00463XD

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Sequence

GLYCAM-IUPAC

DGlcpNAcb1-2[DGlcpNAcb1-6]DManpa1-3[DGlcpNAcb1-2[DGlcpNAcb1-4]DManpa1-6][DGlcpNAcb1-4]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-OH

EdwardsLab
GlycoCT

RES 1b:b-dglc-HEX-1:5 2s:n-acetyl 3b:b-dglc-HEX-1:5 4s:n-acetyl 5b:b-dman-HEX-1:5 6b:a-dman-HEX-1:5 7b:b-dglc-HEX-1:5 8s:n-acetyl 9b:b-dglc-HEX-1:5 10s:n-acetyl 11b:b-dglc-HEX-1:5 12s:n-acetyl 13b:a-dman-HEX-1:5 14b:b-dglc-HEX-1:5 15s:n-acetyl 16b:b-dglc-HEX-1:5 17s:n-acetyl 18b:a-lgal-HEX-1:5|6:d LIN 1:1d(2+1)2n 2:1o(4+1)3d 3:3d(2+1)4n 4:3o(4+1)5d 5:5o(3+1)6d 6:6o(2+1)7d 7:7d(2+1)8n 8:6o(6+1)9d 9:9d(2+1)10n 10:5o(4+1)11d 11:11d(2+1)12n 12:5o(6+1)13d 13:13o(2+1)14d 14:14d(2+1)15n 15:13o(4+1)16d 16:16d(2+1)17n 17:1o(6+1)18d

GlyTouCan
GlycoWorkBench

redEnd--?b?D-b-D-Glcp,p((--2NAc)--4b1D-b-D-Glcp,p(--2NAc)--4b1D-b-D-Manp,p((--3a1D-a-D-Manp,p(--2b1D-b-D-Glcp,p--2NAc)--6b1D-b-D-Glcp,p--2NAc)--4b1D-b-D-Glcp,p--2NAc)--6a1D-a-D-Manp,p(--2b1D-b-D-Glcp,p--2NAc)--4b1D-b-D-Glcp,p--2NAc)--6a1L-a-L-Fucp,p$MONO,perMe,Na,0,redEnd

EdwardsLab
IUPAC

beta-D-GlcpNAc-(1->2)[beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->3)[beta-D-GlcpNAc-(1->4)][beta-D-GlcpNAc-(1->2)[beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-beta-D-GlcpNAc-(1->

EdwardsLab
IUPAC

beta-D-GlcpNAc-(1->2)[beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->3)[beta-D-GlcpNAc-(1->4)][beta-D-GlcpNAc-(1->2)[beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-beta-D-GlcpNAc-(1->

GlyCosmos
WURCS

WURCS=2.0/4,11,10/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5]/1-1-2-3-1-1-1-3-1-1-4/a4-b1_a6-k1_b4-c1_c3-d1_c4-g1_c6-h1_d2-e1_d6-f1_h2-i1_h4-j1

GlyTouCan

Taxonomy

Taxonomy 9606 UniCarbKB:7453

Species

Human Evidence No N-linked Xyl and no NeuGc, Alt
UniCarbKB:7453 TaxID 9606
EdwardsLab
Rat Evidence Composition closure of G29713JZ via G54800IU
Composition closure of G91827TX via G54800IU
EdwardsLab

Molecular Weight

PermethylatedMW 2548.31465468 EdwardsLab
UnderivitizedMW 2071.78255231 EdwardsLab
UnderivitizedMW 2071.7825514 GlyTouCan

Classification

GlycanSubtype N-linked bisected GlycoMotif:GGM.001023
GlycanSubtype N-linked core-fucosylated GlycoMotif:GGM.001024
GlycanSubtype N-linked complex GlycoMotif:GGM.001004
GlycanType N-linked GlycoMotif:GGM.001004

Monosaccharide Counts

FucCount 1 EdwardsLab
GlcNAcCount 7 EdwardsLab
HexCount 3 EdwardsLab
HexNAcCount 7 EdwardsLab
ManCount 3 EdwardsLab
MonosaccharideCount 11 EdwardsLab
dHexCount 1 EdwardsLab
MonosaccharideCount 11 GlyTouCan

Cross Reference

GlyGen G00463XD EdwardsLab
GNOme G00463XD GNOme
GlyCosmos G00463XD GlyCosmos
GlyTouCan G00463XD GlyTouCan
UniCarbKB 7453 UniCarbKB

Publications

Publication 2514791 UniCarbKB:7453

Glycan Motif

ClassMotif GGM.001001, GGM.001004, GGM.001023, GGM.001024, GGM.001027 GlycoMotif
StrictClassMotif GGM.001001, GGM.001004, GGM.001023, GGM.001024, GGM.001027 GlycoMotif

Subsumption

Ancestor G24528MX, G32332VU, G54278KA, G54800IU, G67329OP, G67367OT, G68500FC, G68560MK, G75337UB, G90083OQ, G91034CB, G97100SS GNOme
BaseComposition G67367OT GNOme
Composition G54800IU GNOme
Level Saccharide GNOme
MissingScore 0 GNOme
SubsumedBy G68500FC, G68560MK GNOme
Topology G68500FC GNOme

Glycan Structure

Composition false EdwardsLab
FullyDetermined true EdwardsLab
HasMonosaccharide Fuc, GlcNAc, Hex, HexNAc, Man, dHex EdwardsLab
HasRepeat false EdwardsLab
ReducingEnd GlcNAc, HexNAc EdwardsLab
UndeterminedTopology false EdwardsLab